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| Phenotype molding of stromal cells in the lung tumor microenvironment D Lambrechts, E Wauters, B Boeckx, S Aibar, D Nittner, O Burton, ... Nature medicine 24 (8), 1277-1289, 2018 | 1602 | 2018 |
| A scalable SCENIC workflow for single-cell gene regulatory network analysis B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ... Nature protocols 15 (7), 2247-2276, 2020 | 1304 | 2020 |
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| Toward minimal residual disease-directed therapy in melanoma F Rambow, A Rogiers, O Marin-Bejar, S Aibar, J Femel, M Dewaele, ... Cell 174 (4), 843-855. e19, 2018 | 809 | 2018 |
| Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ... Science 375 (6584), eabk2432, 2022 | 771 | 2022 |
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| GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks T Moerman, S Aibar Santos, C Bravo González-Blas, J Simm, Y Moreau, ... Bioinformatics 35 (12), 2159-2161, 2019 | 628 | 2019 |
| SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks C Bravo González-Blas, S De Winter, G Hulselmans, N Hecker, ... Nature methods 20 (9), 1355-1367, 2023 | 580 | 2023 |
| Alteration of the micro RNA network during the progression of Alzheimer's disease P Lau, K Bossers, R Janky, E Salta, CS Frigerio, S Barbash, R Rothman, ... EMBO molecular medicine 5 (10), 1613-1634, 2013 | 552 | 2013 |
| Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ... Nature communications 6 (1), 6683, 2015 | 499 | 2015 |
| p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity C Adriaens, L Standaert, J Barra, M Latil, A Verfaillie, P Kalev, B Boeckx, ... Nature medicine 22 (8), 861-868, 2016 | 497 | 2016 |
| Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia K De Keersmaecker, ZK Atak, N Li, C Vicente, S Patchett, T Girardi, ... Nature Genetics, 2012 | 487 | 2012 |
| cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data C Bravo González-Blas, L Minnoye, D Papasokrati, S Aibar, ... Nature methods 16 (5), 397-400, 2019 | 426 | 2019 |
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Zeynep Kalender AtakResearch Associate at CRUK Cambridge Institute, University of CambridgeVerified email at cruk.cam.ac.uk
