| Surface modification of silicate, borosilicate and phosphate bioactive glasses to improve/control protein adsorption: PART II V Gobbo, P Turkki, CSD Palma, V Parihar, E Vernè, S Spriano, AS Ribeiro, ... Ceramics International 49 (1), 1261-1275, 2023 | 20 | 2023 |
| Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli S Dash, CSD Palma, ISC Baptista, BLB Almeida, MNM Bahrudeen, ... Nucleic Acids Research 50 (15), 8512–8528, 2022 | 20 | 2022 |
| Surface Modification of Bioresorbable Phosphate Glasses for Controlled Protein Adsorption NB Hyunh, CSD Palma, R Rahikainen, A Mishra, L Azizi, E Verne, ... ACS biomaterials science & engineering 7 (9), 4483-4493, 2021 | 19 | 2021 |
| Analytical kinetic model of native tandem promoters in E. coli V Chauhan, MNM Bahrudeen, CSD Palma, ISC Baptista, BLB Almeida, ... PLOS Computational Biology 18 (1), e1009824, 2022 | 16 | 2022 |
| Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry MNM Bahrudeen, V Chauhan, CSD Palma, SMD Oliveira, VK Kandavalli, ... Journal of microbiological methods 166, 105745, 2019 | 11 | 2019 |
| Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup CSD Palma, V Kandavalli, MNM Bahrudeen, M Minoia, V Chauhan, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (5), 194515, 2020 | 10 | 2020 |
| The transcription factor network of E. coli steers global responses to shifts in RNAP concentration B LB Almeida, MN M. Bahrudeen, V Chauhan, S Dash, V Kandavalli, ... Nucleic Acids Research 50 (12), 6801-6819, 2022 | 9 | 2022 |
| Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli NSM Goncalves, S Startceva, CSD Palma, MNM Bahrudeen, ... Physical biology 15 (2), 026007, 2018 | 9 | 2018 |
| Sequence-dependent model of genes with dual σ factor preference ISC Baptista, V Kandavalli, V Chauhan, MNM Bahrudeen, BLB Almeida, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms, 194812, 2022 | 8* | 2022 |
| Dynamics of bacterial operons during genome-wide stresses is influenced by premature terminations and internal promoters R Jagadeesan, S Dash, CSD Palma, ISC Baptista, V Chauhan, J Mäkelä, ... Science Advances 11 (20), eadl3570, 2025 | 7 | 2025 |
| A strategy for dissecting the kinetics of transcription repression mechanisms CSD Palma, S Startceva, R Neeli-Venkata, M Zare, NSM Goncalves, ... EMBEC & NBC 2017: Joint Conference of the European Medical and Biological …, 2018 | 3 | 2018 |
| Changes in Spo0A~ P pulsing frequency control biofilm matrix deactivation CSD Palma, DJ Haller, JJ Tabor, OA Igoshin PLOS Computational Biology 21 (7), e1013263, 2025 | 1 | 2025 |
| Biophysical modeling reveals the transcriptional regulatory mechanism of Spo0A, the master regulator in starving Bacillus subtilis Y Zhang, CSD Palma, Z Chen, B Zarazúa-Osorio, M Fujita, OA Igoshin MSystems 10 (5), e00072-25, 2025 | 1 | 2025 |
| Modeling σE biochemical network reveals context-dependent feedback control and kinetic constraints in the envelope stress response CSD Palma, N Allen, M Basevicius, H Do, K Li, DJ Haller, A Konovalova, ... bioRxiv, 2025.10. 22.683963, 2025 | | 2025 |
| Temporal dynamics of Spo0A control the B. subtilis cell fate decision of entering starvation or biofilm formation C Palma, D Haller, J Tabor, O Igoshin Bulletin of the American Physical Society, 2024 | | 2024 |
| Repression Mechanisms in Bacterial Transcription C Palma Tampere University, 2022 | | 2022 |
| Dissection of the rate constants of a transcription repression mechanism from live single cell, single molecule microscopy data CSD Palma Tampere University of Technology, 2017 | | 2017 |
Andre S. RibeiroTampere UniversityVerified email at tuni.fi
