| The Drosophila melanogaster genetic reference panel TFC Mackay, S Richards, EA Stone, A Barbadilla, JF Ayroles, D Zhu, ... Nature 482 (7384), 173-178, 2012 | 1999 | 2012 |
| The genetics of quantitative traits: challenges and prospects TFC Mackay, EA Stone, JF Ayroles Nature Reviews Genetics 10 (8), 565-577, 2009 | 1576 | 2009 |
| Systems genetics of complex traits in Drosophila melanogaster JF Ayroles, MA Carbone, EA Stone, KW Jordan, RF Lyman, MM Magwire, ... Nature genetics 41 (3), 299-307, 2009 | 596 | 2009 |
| Epistasis dominates the genetic architecture of Drosophila quantitative traits W Huang, S Richards, MA Carbone, D Zhu, RRH Anholt, JF Ayroles, ... Proceedings of the National Academy of Sciences 109 (39), 15553-15559, 2012 | 439 | 2012 |
| The microbiome extends host evolutionary potential LP Henry, M Bruijning, SKG Forsberg, JF Ayroles Nature communications 12 (1), 5141, 2021 | 384 | 2021 |
| Genetic incompatibilities are widespread within species RB Corbett-Detig, J Zhou, AG Clark, DL Hartl, JF Ayroles Nature 504 (7478), 135-137, 2013 | 242 | 2013 |
| Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster U Ober, JF Ayroles, EA Stone, S Richards, D Zhu, RA Gibbs, C Stricker, ... PLoS genetics 8 (5), e1002685, 2012 | 230 | 2012 |
| Behavioral idiosyncrasy reveals genetic control of phenotypic variability JF Ayroles, SM Buchanan, C O’Leary, K Skutt-Kakaria, JK Grenier, ... Proceedings of the National Academy of Sciences 112 (21), 6706-6711, 2015 | 209 | 2015 |
| Museum genomics: low‐cost and high‐accuracy genetic data from historical specimens KC Rowe, S Singhal, MD Macmanes, JF Ayroles, TL Morelli, EM Rubidge, ... Molecular Ecology Resources 11 (6), 1082-1092, 2011 | 172 | 2011 |
| Arboreal ants build traps to capture prey A Dejean, PJ Solano, J Ayroles, B Corbara, J Orivel Nature 434 (7036), 973-973, 2005 | 151 | 2005 |
| Modulated modularity clustering as an exploratory tool for functional genomic inference EA Stone, JF Ayroles PLoS genetics 5 (5), e1000479, 2009 | 137 | 2009 |
| Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster A Massouras, SM Waszak, M Albarca-Aguilera, K Hens, W Holcombe, ... PLoS genetics 8 (11), e1003055, 2012 | 132 | 2012 |
| Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia DR Schrider, J Ayroles, DR Matute, AD Kern PLoS genetics 14 (4), e1007341, 2018 | 127 | 2018 |
| Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep ST Harbison, MA Carbone, JF Ayroles, EA Stone, RF Lyman, TFC Mackay Nature genetics 41 (3), 371-375, 2009 | 116 | 2009 |
| Systems genetics analysis of body weight and energy metabolism traits in Drosophila melanogaster P Jumbo-Lucioni, JF Ayroles, MM Chambers, KW Jordan, J Leips, ... BMC genomics 11 (1), 297, 2010 | 111 | 2010 |
| A genomewide assessment of inbreeding depression: gene number, function, and mode of action JF Ayroles, KA Hughes, KC Rowe, MM Reedy, SL RODRIGUEZ‐ZAS, ... Conservation Biology 23 (4), 920-930, 2009 | 91 | 2009 |
| Segregating variation in the transcriptome: cis regulation and additivity of effects KA Hughes, JF Ayroles, MM Reedy, JM Drnevich, KC Rowe, EA Ruedi, ... Genetics 173 (3), 1347-1355, 2006 | 84 | 2006 |
| Natural selection for imprecise vertical transmission in host–microbiota systems M Bruijning, LP Henry, SKG Forsberg, CJE Metcalf, JF Ayroles Nature ecology & evolution 6 (1), 77-87, 2022 | 79 | 2022 |
| A transcriptional network associated with natural variation in Drosophila aggressive behavior AC Edwards, JF Ayroles, EA Stone, MA Carbone, RF Lyman, TF Mackay Genome Biol 10 (7), R76, 2009 | 72 | 2009 |
| Hybridization occurs between Drosophila simulans and D. sechellia in the Seychelles archipelago DR Matute, JF Ayroles Journal of evolutionary biology 27 (6), 1057-1068, 2014 | 70 | 2014 |