| Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility R Denise, SS Abby, EPC Rocha PLoS biology 17 (7), e3000390, 2019 | 196 | 2019 |
| MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes B Néron, R Denise, C Coluzzi, M Touchon, E PC Peer Community Journal 3 (e28), 2023 | 128 | 2023 |
| The evolution of protein secretion systems by co-option and tinkering of cellular machineries R Denise, SS Abby, EPC Rocha Trends in Microbiology 28 (5), 372-386, 2020 | 61 | 2020 |
| taxMyPhage: automated taxonomy of dsDNA phage genomes at the genus and species level. Phage (New Rochelle) 6: 5–11 A Millard, R Denise, M Lestido, MT Thomas, D Webster, D Turner, ... | 57* | 2024 |
| Motor-independent retraction of type IV pili is governed by an inherent property of the pilus filament JL Chlebek, R Denise, L Craig, AB Dalia Proceedings of the National Academy of Sciences 118 (47), e2102780118, 2021 | 33 | 2021 |
| The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold D Sheppard, JL Berry, R Denise, EPC Rocha, S Matthews, V Pelicic Journal of Biological Chemistry 295 (19), 6594-6604, 2020 | 28 | 2020 |
| Identification of protein secretion systems in bacterial genomes using MacSyFinder version 2 SS Abby, R Denise, EPC Rocha Bacterial Secretion Systems: Methods and Protocols 2715, 1, 2023 | 22 | 2023 |
| Pyridoxal 5’-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes R Denise, J Babor, JA Gerlt, V de Crécy-Lagard Microbial genomics 9 (2), 000926, 2023 | 16 | 2023 |
| Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage φPDS1 from the human gut A Cortés-Martín, R Denise, E Guerin, SR Stockdale, LA Draper, RP Ross, ... Gut Microbes 16 (1), 2298254, 2024 | 7 | 2024 |
| Antibiotic perturbation of the human gut phageome preserves its individuality and promotes blooms of virulent phages E Pfeifer, C d’Humières, Q Lamy-Besnier, FP Oñate, R Denise, S Dion, ... Cell Reports 44 (8), 2025 | 3 | 2025 |
| Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood information for protein families CJ Reed, R Denise, J Hourihan, J Babor, M Jaroch, M Martinelli, ... Microbial Genomics 10 (2), 001183, 2024 | 3 | 2024 |
| Stable co-existence of Citrobacter rodentium with a lytic bacteriophage during in vivo murine infection A Peters, H Shareefdeen, J Sanchez-Garrido, EJ Cohen, R Denise, ... mBio, e01944-25, 2025 | | 2025 |
| Assessing the Therapeutic Potential of an Endolysin Present in Six Novel Phages Targeting Cutibacterium acnes. E Murray, R Denise, AR Fernandes, NN Abadi, LA Draper, PR Ross, ... Therapeutic and Diagnostic Potential of Endolysins Targeting Gram-Positive …, 2024 | | 2024 |
| Co-option de systèmes moléculaires complexes de la membrane bactérienne et archéenne R Denise Sorbonne Université, 2019 | | 2019 |
| Code assigned: 2023.007 B H Shareefdeen, C Buttimer, R Denise, A Kropinski, D Turner, LA Draper, ... | | |
Eduardo RochaCNRS, Institut PasteurVerified email at pasteur.fr
