| Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020 | 1428 | 2020 |
| Good laboratory practice for clinical next-generation sequencing informatics pipelines AS Gargis, L Kalman, DP Bick, C Da Silva, DP Dimmock, BH Funke, ... Nature biotechnology 33 (7), 689-693, 2015 | 182 | 2015 |
| Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021 | 178 | 2021 |
| kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data A Artyomenko, N Mancuso, P Skums, I Mandoiu, A Zelikovsky Proc. International Symposium Bioinformatics Research and Applications, 2013 | 146* | 2013 |
| Efficient error correction for next-generation sequencing of viral amplicons P Skums, Z Dimitrova, DS Campo, G Vaughan, L Rossi, JC Forbi, ... BMC Bioinformatics 13 (Suppl 10), S6, 2012 | 103 | 2012 |
| Accurate genetic detection of hepatitis C virus transmissions in outbreak settings DS Campo, GL Xia, Z Dimitrova, Y Lin, JC Forbi, L Ganova-Raeva, ... The Journal of infectious diseases 213 (6), 957-965, 2016 | 100 | 2016 |
| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ... Bioinformatics 34 (1), 163-170, 2018 | 87 | 2018 |
| Epidemiological data analysis of viral quasispecies in the next-generation sequencing era S Knyazev, L Hughes, P Skums, A Zelikovsky Briefings in bioinformatics 22 (1), 96-108, 2021 | 74 | 2021 |
| A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015 S Ramachandran, H Thai, JC Forbi, RR Galang, Z Dimitrova, G Xia, Y Lin, ... EBioMedicine 37, 374-381, 2018 | 74 | 2018 |
| Next-generation sequencing reveals large connected networks of intra-host HCV variants DS Campo, Z Dimitrova, L Yamasaki, P Skums, DTY Lau, G Vaughan, ... BMC genomics 15 (Suppl 5), S4, 2014 | 71 | 2014 |
| Unlocking capacities of genomics for the COVID-19 response and future pandemics S Knyazev, K Chhugani, V Sarwal, R Ayyala, H Singh, S Karthikeyan, ... Nature Methods 19 (4), 374-380, 2022 | 68 | 2022 |
| Benchmarking of computational error-correction methods for next-generation sequencing data K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ... Genome biology 21 (1), 71, 2020 | 67 | 2020 |
| Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... Nucleic acids research 49 (17), e102-e102, 2021 | 63 | 2021 |
| GHOST: global hepatitis outbreak and surveillance technology AG Longmire, S Sims, I Rytsareva, DS Campo, P Skums, Z Dimitrova, ... BMC genomics 18 (Suppl 10), 916, 2017 | 53 | 2017 |
| Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity P Skums, L Bunimovich, Y Khudyakov Proceedings of the National Academy of Sciences 112 (21), 6653-6658, 2015 | 53 | 2015 |
| Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows P Skums, N Mancuso, A Artyomenko, B Tork, I Mandoiu, Y Khudyakov, ... BMC bioinformatics 14 (Suppl 9), S2, 2013 | 41 | 2013 |
| Sensory nerves impede the formation of tertiary lymphoid structures and development of protective antimelanoma immune responses K Vats, O Kruglov, B Sahoo, V Soman, J Zhang, GV Shurin, UR Chandran, ... Cancer immunology research 10 (9), 1141-1154, 2022 | 38 | 2022 |
| From alpha to zeta: Identifying variants and subtypes of sars-cov-2 via clustering A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ... Journal of Computational Biology 28 (11), 1113-1129, 2021 | 36* | 2021 |
| Cliquesnv: Scalable reconstruction of intra-host viral populations from ngs reads S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ... BioRxiv, 264242, 2018 | 36* | 2018 |
| Analysis of the evolution and structure of a complex intrahost viral population in chronic hepatitis C virus mapped by ultradeep pyrosequencing BA Palmer, Z Dimitrova, P Skums, O Crosbie, E Kenny-Walsh, LJ Fanning Journal of virology 88 (23), 13709-13721, 2014 | 36 | 2014 |
Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu
