| CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo MA Moreno-Mateos, CE Vejnar, JD Beaudoin, JP Fernandez, EK Mis, ... Nature methods 12 (10), 982-988, 2015 | 1515 | 2015 |
| Identification of small ORF s in vertebrates using ribosome footprinting and evolutionary conservation AA Bazzini, TG Johnstone, R Christiano, SD Mackowiak, B Obermayer, ... The EMBO journal 33 (9), 981-993, 2014 | 764 | 2014 |
| Integration of microRNA miR-122 in hepatic circadian gene expression D Gatfield, G Le Martelot, CE Vejnar, D Gerlach, O Schaad, F Fleury-Olela, ... Genes & development 23 (11), 1313-1326, 2009 | 496 | 2009 |
| MiRmap: comprehensive prediction of microRNA target repression strength CE Vejnar, EM Zdobnov Nucleic acids research 40 (22), 11673-11683, 2012 | 436 | 2012 |
| Codon identity regulates mRNA stability and translation efficiency during the maternal‐to‐zygotic transition AA Bazzini, F Del Viso, MA Moreno‐Mateos, TG Johnstone, CE Vejnar, ... The EMBO journal 35 (19), 2087-2103, 2016 | 344 | 2016 |
| CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing MA Moreno-Mateos, JP Fernandez, R Rouet, CE Vejnar, MA Lane, E Mis, ... Nature communications 8 (1), 2024, 2017 | 333 | 2017 |
| The common marmoset genome provides insight into primate biology and evolution TMG Sequencing, Analysis Consortium Nature genetics 46 (8), 850, 2014 | 237 | 2014 |
| Sertoli cell Dicer is essential for spermatogenesis in mice MD Papaioannou, JL Pitetti, S Ro, C Park, F Aubry, O Schaad, CE Vejnar, ... Developmental biology 326 (1), 250-259, 2009 | 230 | 2009 |
| Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function I Dunand-Sauthier, ML Santiago-Raber, L Capponi, CE Vejnar, O Schaad, ... Blood, The Journal of the American Society of Hematology 117 (17), 4490-4500, 2011 | 194 | 2011 |
| miRmap web: comprehensive microRNA target prediction online CE Vejnar, M Blum, EM Zdobnov Nucleic acids research 41 (W1), W165-W168, 2013 | 187 | 2013 |
| Brd4 and P300 confer transcriptional competency during zygotic genome activation SH Chan, Y Tang, L Miao, H Darwich-Codore, CE Vejnar, JD Beaudoin, ... Developmental cell 49 (6), 867-881. e8, 2019 | 162 | 2019 |
| Analyses of mRNA structure dynamics identify embryonic gene regulatory programs JD Beaudoin, EM Novoa, CE Vejnar, V Yartseva, CM Takacs, M Kellis, ... Nature structural & molecular biology 25 (8), 677-686, 2018 | 129 | 2018 |
| Loss of Dicer in Sertoli cells has a major impact on the testicular proteome of mice MD Papaioannou, M Lagarrigue, CE Vejnar, AD Rolland, F Kühne, ... Molecular & Cellular Proteomics 10 (4), 2011 | 117 | 2011 |
| Optimized CRISPR–Cas9 system for genome editing in zebrafish CE Vejnar, MA Moreno-Mateos, D Cifuentes, AA Bazzini, AJ Giraldez Cold Spring Harbor Protocols 2016 (10), pdb. prot086850, 2016 | 114 | 2016 |
| Repression of arginase-2 expression in dendritic cells by microRNA-155 is critical for promoting T cell proliferation I Dunand-Sauthier, M Irla, S Carnesecchi, Q Seguín-Estévez, CE Vejnar, ... The Journal of Immunology 193 (4), 1690-1700, 2014 | 95 | 2014 |
| miROrtho: computational survey of microRNA genes D Gerlach, EV Kriventseva, N Rahman, CE Vejnar, EM Zdobnov Nucleic acids research 37 (suppl_1), D111-D117, 2009 | 95 | 2009 |
| Chromatin expansion microscopy reveals nanoscale organization of transcription and chromatin ME Pownall, L Miao, CE Vejnar, O M’Saad, A Sherrard, MA Frederick, ... Science 381 (6653), 92-100, 2023 | 94 | 2023 |
| The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation L Miao, Y Tang, AR Bonneau, SH Chan, ML Kojima, ME Pownall, ... Molecular Cell 82 (5), 986-1002. e9, 2022 | 94 | 2022 |
| Identification of cis-and trans-regulatory variation modulating microRNA expression levels in human fibroblasts C Borel, S Deutsch, A Letourneau, E Migliavacca, SB Montgomery, ... Genome research 21 (1), 68-73, 2011 | 93 | 2011 |
| Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish CE Vejnar, MA Messih, CM Takacs, V Yartseva, P Oikonomou, ... Genome research 29 (7), 1100-1114, 2019 | 85 | 2019 |
