| Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression A Hausmann, D Böck, P Geiser, DL Berthold, SA Fattinger, M Furter, ... Mucosal immunology 13 (3), 530-544, 2020 | 132 | 2020 |
| COVID-19 infectivity profile correction P Ashcroft, JS Huisman, S Lehtinen, JA Bouman, CL Althaus, RR Regoes, ... arXiv preprint arXiv:2007.06602, 2020 | 100 | 2020 |
| Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches JA Bouman, J Riou, S Bonhoeffer, RR Regoes PLoS Computational Biology 17 (2), e1008728, 2021 | 29* | 2021 |
| Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models JA Bouman, A Hauser, SL Grimm, M Wohlfender, S Bhatt, E Semenova, ... PLoS computational biology 20 (4), e1011575, 2024 | 18 | 2024 |
| Per-pathogen virulence of HIV-1 subtypes A, C and D JA Bouman, CM Venner, C Walker, EJ Arts, RR Regoes Proceedings of the Royal Society B 290 (1998), 20222572, 2023 | 6 | 2023 |
| Correcting for Antibody Waning in Cumulative Incidence Estimation From Sequential Serosurveys S Kadelka, JA Bouman, P Ashcroft, RR Regoes American journal of epidemiology 193 (5), 777-786, 2024 | 4 | 2024 |
| Applying mixture model methods to SARS-CoV-2 serosurvey data from Geneva JA Bouman, S Kadelka, S Stringhini, F Pennacchio, B Meyer, S Yerly, ... Epidemics 39, 100572, 2022 | 3 | 2022 |
| Diversity of vaccination-induced immune responses can prevent the spread of vaccine escape mutants JA Bouman, C Capelli, RR Regoes bioRxiv, 2021.04. 14.439790, 2021 | 3 | 2021 |
| Comment on Buss et al., Science 2021: An alternative, empirically-supported adjustment for sero-reversion yields a 10 percentage point lower estimate of the cumulative … S Kadelka, JA Bouman, P Ashcroft, RR Regoes arXiv preprint arXiv:2103.13951, 2021 | 3 | 2021 |
| ICD-10 code embedding for patient matching: a first step towards applications in causal inference from hospital discharge data JA Bouman, A Moser, M Wohlfender, AB Leichtle, G Beldi, O Endrich, ... AJE Advances: Research in Epidemiology, uuaf010, 2025 | | 2025 |
| Estimating transmission heterogeneity and case ascertainment from variations in case counts in surveillance data J Bouman, J Backer, C Althaus International Journal of Infectious Diseases 152, 107435, 2025 | | 2025 |
| Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection N Ochsner, J Bouman, T Vaughan, T Stadler, S Bonhoeffer, R Regoes bioRxiv, 2025.01. 06.631458, 2025 | | 2025 |
| Machine learning-based short-term forecasting of COVID-19 hospital admissions using routine hospital patient data MS Wohlfender, JA Bouman, O Endrich, A Ramette, AB Leichtle, G Beldi, ... medRxiv, 2025.05. 21.25328056, 2025 | | 2025 |
| Understanding testing bias in SARS-CoV-2 routine surveillance data A Hauser, J Bouman, E Semenova, J Riou OSF, 2022 | | 2022 |
| Mathematical modelling of viral infections using sequence, clinical and serological data JA Bouman ETH Zurich, 2022 | | 2022 |
| Estimating Time-Dependent Transmission Rates of Sars-Cov-2 in a Stratified Population: A Systematic Comparison of Three Methods J Bouman, A Hauser, S Grimm, M Wohlfender, C Althaus, J Riou, S Bhatt, ... 9TH INTERNATIONAL CONFERENCE ON INFECTIOUS DISEASE DYNAMICS P 2, 0 | | |
