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Jerome de Ruyck
Jerome de Ruyck
UGSF - Université de Lille
Verified email at univ-lille.fr - Homepage
Title
Cited by
Cited by
Year
Molecular docking as a popular tool in drug design, an in silico travel
J De Ruyck, G Brysbaert, R Blossey, MF Lensink
Advances and Applications in Bioinformatics and Chemistry, 1-11, 2016
4722016
3, 6-Disubstituted coumarins as mechanism-based inhibitors of thrombin and factor Xa
R Frédérick, S Robert, C Charlier, J de Ruyck, J Wouters, B Pirotte, ...
Journal of medicinal chemistry 48 (24), 7592-7603, 2005
932005
Towards the understanding of the absorption spectra of NAD (P) H/NAD (P)+ as a common indicator of dehydrogenase enzymatic activity
J De Ruyck, M Famerée, J Wouters, EA Perpète, J Preat, D Jacquemin
Chemical Physics Letters 450 (1-3), 119-122, 2007
722007
The Antiadhesive Strategy in Crohn′s Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut
D Alvarez Dorta, A Sivignon, T Chalopin, TI Dumych, G Roos, RO Bilyy, ...
ChemBioChem 17 (10), 936-952, 2016
702016
How the second-order nonlinear optical response of the collagen triple helix appears: a theoretical investigation
M de Wergifosse, J de Ruyck, B Champagne
The Journal of Physical Chemistry C 118 (16), 8595-8602, 2014
462014
Structure of Thermus thermophilus type 2 isopentenyl diphosphate isomerase inferred from crystallography and molecular dynamics
J de Ruyck, SC Rothman, CD Poulter, J Wouters
Biochemical and biophysical research communications 338 (3), 1515-1518, 2005
382005
Targeting dynamical binding processes in the design of non-antibiotic anti-adhesives by molecular simulation—The example of FimH
EM Krammer, J De Ruyck, G Roos, J Bouckaert, MF Lensink
Molecules 23 (7), 1641, 2018
352018
Signal transduction by BvgS sensor kinase: binding of modulator nicotinate affects the conformation and dynamics of the entire periplasmic moiety
E Dupré, E Lesne, J Guérin, MF Lensink, A Verger, J De Ruyck, ...
Journal of Biological Chemistry 290 (38), 23307-23319, 2015
312015
Structures of C-mannosylated anti-adhesives bound to the type 1 fimbrial FimH adhesin
J De Ruyck, MF Lensink, J Bouckaert
IUCrJ 3 (3), 163-167, 2016
302016
Crystal Structure of Type 2 Isopentenyl Diphosphate Isomerase from Thermus thermophilus in Complex with Inorganic Pyrophosphate
J De Ruyck, J Pouyez, SC Rothman, D Poulter, J Wouters
Biochemistry 47 (35), 9051-9053, 2008
282008
Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography
J De Ruyck, V Durisotti, Y Oudjama, J Wouters
Journal of Biological Chemistry 281 (26), 17864-17869, 2006
232006
Structure‐Based Design and Synthesis of Piperidinol‐Containing Molecules as New Mycobacterium abscessus Inhibitors
J De Ruyck, C Dupont, E Lamy, V Le Moigne, C Biot, Y Guérardel, ...
ChemistryOpen 9 (3), 351-365, 2020
212020
Identification of Key Residues in Proteins Through Centrality Analysis and Flexibility Prediction with RINspector
G Brysbaert, T Mauri, J de Ruyck, MF Lensink
Current Protocols in Bioinformatics, e66, 2018
212018
Inhibition studies on enzymes involved in isoprenoid biosynthesis. Focus on two potential drug targets: dxr and idi-2 enzymes
J de Ruyck, J Wouters, CD Poulter
Current enzyme inhibition 7 (2), 79-95, 2011
212011
Analysis of the Interactions Taking Place in the Recognition Site of a Bimetallic Mg (II)− Zn (II) Enzyme, Isopentenyl Diphosphate Isomerase. A Parallel Quantum-Chemical and …
N Gresh, N Audiffren, JP Piquemal, J De Ruyck, M Ledecq, J Wouters
The Journal of Physical Chemistry B 114 (14), 4884-4895, 2010
212010
Direct interaction of TrkA/CD44v3 is essential for NGF-promoted aggressiveness of breast cancer cells
S Trouvilliez, J Cicero, R Lévêque, L Aubert, C Corbet, A Van Outryve, ...
Journal of experimental & clinical cancer research 41 (1), 110, 2022
202022
Dissection of the anti-Candida albicans mannan immune response using synthetic oligomannosides reveals unique properties of β-1,2 mannotriose protective …
B Sendid, K Lecointe, M Collot, PM Danzé, S Damiens, AS Drucbert, ...
Scientific Reports 11 (1), 10825, 2021
202021
Structure-based drug design targeting biosynthesis of isoprenoids: a crystallographic state of the art of the involved enzymes
J de Ruyck, J Wouters
Current Protein and Peptide Science 9 (2), 117-137, 2008
202008
Structural insights into a cooperative switch between one and two FimH bacterial adhesins binding pauci-and high-mannose type N-glycan receptors
EM Krammer, C Bridot, S Serna, B Echeverria, S Semwal, B Roubinet, ...
Journal of Biological Chemistry 299 (5), 2023
192023
Physiochemical Tuning of Potent Escherichia coli Anti‐Adhesives by Microencapsulation and Methylene Homologation
D Alvarez Dorta, T Chalopin, A Sivignon, J De Ruyck, TI Dumych, ...
ChemMedChem 12 (12), 986-998, 2017
182017
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Articles 1–20