| Simultaneous denoising, deconvolution, and demixing of calcium imaging data EA Pnevmatikakis, D Soudry, Y Gao, TA Machado, J Merel, D Pfau, ... Neuron 89 (2), 285-299, 2016 | 1246 | 2016 |
| Light-sheet functional imaging in fictively behaving zebrafish N Vladimirov, Y Mu, T Kawashima, DV Bennett, CT Yang, LL Looger, ... Nature methods 11 (9), 883-884, 2014 | 396 | 2014 |
| Glia accumulate evidence that actions are futile and suppress unsuccessful behavior Y Mu*, DV Bennett*, M Rubinov*, S Narayan, CT Yang, M Tanimoto, ... Cell 178 (1), 27-43. e19, 2019 | 390 | 2019 |
| Mapping brain activity at scale with cluster computing J Freeman, N Vladimirov, T Kawashima, Y Mu, NJ Sofroniew, DV Bennett, ... Nature methods 11 (9), 941-950, 2014 | 340 | 2014 |
| Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion TW Dunn*, Y Mu*, S Narayan, O Randlett, EA Naumann, CT Yang, ... Elife 5, e12741, 2016 | 334 | 2016 |
| Signal propagation in complex networks P Ji, J Ye, Y Mu, W Lin, Y Tian, C Hens, M Perc, Y Tang, J Sun, J Kurths Physics reports 1017, 1-96, 2023 | 325 | 2023 |
| Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish Xiuye Chen*, Yu Mu*,Yu Hu*, Aaron T. Kuan*, Maxim Nikitchenko, Owen Randlett ... Neuron 100 (4), 876-890, 2018 | 194 | 2018 |
| Visual input modulates audiomotor function via hypothalamic dopaminergic neurons through a cooperative mechanism Y Mu*, X Li*, B Zhang, J Du Neuron 75 (4), 688-699, 2012 | 128 | 2012 |
| Grhl2 deficiency impairs otic development and hearing ability in a zebrafish model of the progressive dominant hearing loss DFNA28 Y Han, Y Mu, X Li, P Xu, J Tong, Z Liu, T Ma, G Zeng, S Yang, J Du, ... Human molecular genetics 20 (16), 3213-3226, 2011 | 103 | 2011 |
| Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function N Vladimirov, C Wang, B Höckendorf, A Pujala, M Tanimoto, Y Mu, ... Nature methods 15 (12), 1117-1125, 2018 | 86 | 2018 |
| Overexpression of Wlds or Nmnat2 in mauthner cells by single‐cell electroporation delays axon degeneration in live zebrafish Y Feng, T Yan, J Zheng, X Ge, Y Mu, Y Zhang, D Wu, J Du, Q Zhai Journal of neuroscience research 88 (15), 3319-3327, 2010 | 61 | 2010 |
| Multi-scale approaches for high-speed imaging and analysis of large neural populations J Friedrich, W Yang, D Soudry, Y Mu, MB Ahrens, R Yuste, DS Peterka, ... PLoS computational biology 13 (8), e1005685, 2017 | 60 | 2017 |
| Real-time analysis of large-scale neuronal imaging enables closed-loop investigation of neural dynamics CF Shang, YF Wang, MT Zhao, QX Fan, S Zhao, Y Qian, SJ Xu, Y Mu, ... Nature Neuroscience 27 (5), 1014-1018, 2024 | 34 | 2024 |
| Dimensionality reduction of calcium-imaged neuronal population activity TH Koh, WE Bishop, T Kawashima, BB Jeon, R Srinivasan, Y Mu, Z Wei, ... Nature computational science 3 (1), 71-85, 2023 | 25 | 2023 |
| Locus coeruleus in non-mammalian vertebrates S Wang, Z Wang, Y Mu Brain Sciences 12 (2), 134, 2022 | 20 | 2022 |
| Brain-wide, scale-wide physiology underlying behavioral flexibility in zebrafish Y Mu, S Narayan, BD Mensh, MB Ahrens Current Opinion in Neurobiology 64, 151-160, 2020 | 19 | 2020 |
| Time-resolved correlation of distributed brain activity tracks EI balance and accounts for diverse scale-free phenomena A Nanda, GW Johnson, Y Mu, MB Ahrens, C Chang, DJ Englot, ... Cell reports 42 (4), 2023 | 18 | 2023 |
| Volumetric voltage imaging of neuronal populations in the mouse brain by confocal light-field microscopy L Bai, L Cong, Z Shi, Y Zhao, Y Zhang, B Lu, J Zhang, ZQ Xiong, N Xu, ... Nature Methods 21 (11), 2160-2170, 2024 | 17 | 2024 |
| In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors Y Zheng, R Cai, K Wang, J Zhang, Y Zhuo, H Dong, Y Zhang, Y Wang, ... Science 388 (6751), eadt7705, 2025 | 16 | 2025 |
| Fast constrained non-negative matrix factorization for whole-brain calcium imaging data J Friedrich, D Soudry, Y Mu, J Freeman, MB Ahrens, L Paninski NIPS workshop on statistical methods for understanding neural systems, 2015 | 13 | 2015 |
