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| Enterotypes of the human gut microbiome M Arumugam, J Raes, E Pelletier, D Le Paslier, T Yamada, DR Mende, ... nature 473 (7346), 174-180, 2011 | 9495 | 2011 |
| A metagenome-wide association study of gut microbiota in type 2 diabetes J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ... nature 490 (7418), 55-60, 2012 | 8017 | 2012 |
| Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013 | 5568 | 2013 |
| SOAP2: an improved ultrafast tool for short read alignment R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang Bioinformatics 25 (15), 1966-1967, 2009 | 4298 | 2009 |
| Dynamics and stabilization of the human gut microbiome during the first year of life F Bäckhed, J Roswall, Y Peng, Q Feng, H Jia, P Kovatcheva-Datchary, ... Cell host & microbe 17 (5), 690-703, 2015 | 4295 | 2015 |
| SOAP: short oligonucleotide alignment program R Li, Y Li, K Kristiansen, J Wang Bioinformatics 24 (5), 713-714, 2008 | 3884 | 2008 |
| De novo assembly of human genomes with massively parallel short read sequencing R Li, H Zhu, J Ruan, W Qian, X Fang, Z Shi, Y Li, S Li, G Shan, ... Genome research 20 (2), 265-272, 2010 | 3463 | 2010 |
| An integrated catalog of reference genes in the human gut microbiome J Li, H Jia, X Cai, H Zhong, Q Feng, S Sunagawa, M Arumugam, ... Nature biotechnology 32 (8), 834-841, 2014 | 2472 | 2014 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2392 | 2007 |
| Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015 | 2364 | 2015 |
| Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016 | 2248 | 2016 |
| The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment X Zhang, D Zhang, H Jia, Q Feng, D Wang, D Liang, X Wu, J Li, L Tang, ... Nature medicine 21 (8), 895-905, 2015 | 1960 | 2015 |
| Sequencing of 50 human exomes reveals adaptation to high altitude X Yi, Y Liang, E Huerta-Sanchez, X Jin, ZXP Cuo, JE Pool, X Xu, H Jiang, ... science 329 (5987), 75-78, 2010 | 1934 | 2010 |
| The genome of the cucumber, Cucumis sativus L. S Huang, R Li, Z Zhang, LI Li, X Gu, W Fan, WJ Lucas, X Wang, B Xie, ... Nature genetics 41 (12), 1275-1281, 2009 | 1786 | 2009 |
| The gut microbiome in atherosclerotic cardiovascular disease Z Jie, H Xia, SL Zhong, Q Feng, S Li, S Liang, H Zhong, Z Liu, Y Gao, ... Nature communications 8 (1), 845, 2017 | 1708 | 2017 |
| Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention R Liu, J Hong, X Xu, Q Feng, D Zhang, Y Gu, J Shi, S Zhao, W Liu, ... Nature medicine 23 (7), 859-868, 2017 | 1566 | 2017 |
| Gut microbiome development along the colorectal adenoma–carcinoma sequence Q Feng, S Liang, H Jia, A Stadlmayr, L Tang, Z Lan, D Zhang, H Xia, X Xu, ... Nature communications 6 (1), 6528, 2015 | 1494 | 2015 |
| The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010 | 1450 | 2010 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 1286 | 2014 |
