| Selecting optimal partitioning schemes for phylogenomic datasets R Lanfear, B Calcott, D Kainer, C Mayer, A Stamatakis BMC evolutionary biology 14 (1), 82, 2014 | 810 | 2014 |
| Accelerating climate resilient plant breeding by applying next-generation artificial intelligence AL Harfouche, DA Jacobson, D Kainer, JC Romero, AH Harfouche, ... Trends in biotechnology 37 (11), 1217-1235, 2019 | 327 | 2019 |
| Plant-Derived Terpenes: A Feedstock for Specialty Biofuels R Mewalal, DK Rai, D Kainer, F Chen, C Külheim, GF Peter, GA Tuskan Trends in Biotechnology 35 (3), 227-240, 2017 | 230 | 2017 |
| MinIONQC: fast and simple quality control for MinION sequencing data R Lanfear, M Schalamun, D Kainer, W Wang, B Schwessinger Bioinformatics 35 (3), 523-525, 2019 | 220 | 2019 |
| The effects of partitioning on phylogenetic inference D Kainer, R Lanfear Molecular biology and evolution 32 (6), 1611-1627, 2015 | 149 | 2015 |
| Multi‐trait genome‐wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits HB Chhetri, DM Sanz, D Kainer, AK Biswal, LM Evans, JG Chen, ... New Phytologist, 2019 | 119 | 2019 |
| Harnessing the MinION: An example of how to establish long‐read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora M Schalamun, R Nagar, D Kainer, E Beavan, D Eccles, JP Rathjen, ... Molecular ecology resources 19 (1), 77-89, 2019 | 88 | 2019 |
| Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case W Wang, M Schalamun, A Morales-Suarez, D Kainer, B Schwessinger, ... BMC genomics 19 (1), 977, 2018 | 80 | 2018 |
| A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant AJ Orr, A Padovan, D Kainer, C Külheim, L Bromham, C Bustos-Segura, ... Proceedings of the Royal Society B 287 (1922), 20192364, 2020 | 77 | 2020 |
| Can exascale computing and explainable artificial intelligence applied to plant biology deliver on the United Nations sustainable development goals? J Streich, J Romero, JGFM Gazolla, D Kainer, A Cliff, ET Prates, JB Brown, ... Current Opinion in Biotechnology 61, 217-225, 2020 | 76 | 2020 |
| Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction W Joubert, D Weighill, D Kainer, S Climer, A Justice, K Fagnan, ... SC18: International Conference for High Performance Computing, Networking …, 2018 | 76 | 2018 |
| A genome-wide association study of suicide attempts in the million veterans program identifies evidence of pan-ancestry and ancestry-specific risk loci NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ... Molecular psychiatry 27 (4), 2264-2272, 2022 | 70 | 2022 |
| Potentially adaptive SARS-CoV-2 mutations discovered with novel spatiotemporal and explainable AI models MR Garvin, ET Prates, M Pavicic, P Jones, BK Amos, A Geiger, MB Shah, ... Genome Biology 21 (1), 1-26, 2020 | 69 | 2020 |
| The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies W Wang, A Das, D Kainer, M Schalamun, A Morales-Suarez, ... GigaScience 9 (1), giz160, 2020 | 67 | 2020 |
| Identification of novel, replicable genetic risk loci for suicidal thoughts and behaviors among US Military Veterans NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ... JAMA psychiatry 80 (2), 135-145, 2023 | 54 | 2023 |
| A High-Performance Computing Implementation of Iterative Random Forest for the Creation of Predictive Expression Networks A Cliff, J Romero, D Kainer, A Walker, A Furches, D Jacobson Genes 10 (12), 996, 2019 | 52 | 2019 |
| Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa HB Chhetri, A Furches, D Macaya-Sanz, AR Walker, D Kainer, P Jones, ... Frontiers in plant science 11, 545748, 2020 | 48 | 2020 |
| High marker density GWAS provides novel insights into the genomic architecture of terpene oil yield in Eucalyptus D Kainer, A Padovan, J Degenhardt, S Krause, P Mondal, WJ Foley, ... New Phytologist, 2019 | 48 | 2019 |
| Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data AM Walker, A Cliff, J Romero, MB Shah, P Jones, JGFM Gazolla, ... Computational and Structural Biotechnology Journal 20, 3372-3386, 2022 | 44 | 2022 |
| Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea D Kainer, EA Stone, A Padovan, WJ Foley, C Külheim G3: Genes, Genomes, Genetics 8 (8), 2573-2583, 2018 | 44 | 2018 |
Daniel JacobsonComputational Systems Biologist, Distinguished Research Scientist, Oak Ridge National LaboratoryVerified email at ornl.gov
