| A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data D Coil, G Jospin, AE Darling Bioinformatics 31 (4), 587-589, 2014 | 1254 | 2014 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes AE Darling, G Jospin, E Lowe, FA Matsen IV, HM Bik, JA Eisen PeerJ 2, e243, 2014 | 692 | 2014 |
| Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota A Van Deynze, P Zamora, PM Delaux, C Heitmann, D Jayaraman, ... PLoS biology 16 (8), e2006352, 2018 | 447 | 2018 |
| Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation PM Rosado, DCA Leite, GAS Duarte, RM Chaloub, G Jospin, ... The ISME journal 13 (4), 921-936, 2019 | 438 | 2019 |
| Global marine bacterial diversity peaks at high latitudes in winter J Ladau, TJ Sharpton, MM Finucane, G Jospin, SW Kembel, J O’dwyer, ... The ISME journal 7 (9), 1669-1677, 2013 | 251 | 2013 |
| Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups D Wu, G Jospin, JA Eisen PloS one 8 (10), e77033, 2013 | 218 | 2013 |
| Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia LM Olde Loohuis, S Mangul, APS Ori, G Jospin, D Koslicki, HT Yang, ... Translational psychiatry 8 (1), 96, 2018 | 126* | 2018 |
| PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2: e243 AE Darling, G Jospin, E Lowe, FA Matsen, HM Bik, JA Eisen | 125 | 2014 |
| Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia LGE Wilkins, CL Ettinger, G Jospin, JA Eisen Scientific reports 9 (1), 3059, 2019 | 111 | 2019 |
| The bacterial communities of Drosophila suzukii collected from undamaged cherries JA Chandler, PM James, G Jospin, JM Lang PeerJ 2, e474, 2014 | 81 | 2014 |
| Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections J Ibrahim, JA Eisen, G Jospin, DA Coil, G Khazen, S Tokajian PloS one 11 (12), e0168177, 2016 | 67 | 2016 |
| A phylogenetically novel cyanobacterium most closely related to Gloeobacter CL Grettenberger, DY Sumner, K Wall, CT Brown, JA Eisen, TJ Mackey, ... The ISME journal 14 (8), 2142-2152, 2020 | 66 | 2020 |
| Recent outbreaks of shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance VK Kozyreva, G Jospin, AL Greninger, JP Watt, JA Eisen, V Chaturvedi Msphere 1 (6), 10.1128/msphere. 00344-16, 2016 | 50 | 2016 |
| The Kitty Microbiome Project: Defining the healthy fecal “core microbiome” in pet domestic cats HH Ganz, G Jospin, CA Rojas, AL Martin, K Dahlhausen, DD Kingsbury, ... Veterinary Sciences 9 (11), 635, 2022 | 43 | 2022 |
| Swabs to genomes: a comprehensive workflow MI Dunitz, JM Lang, G Jospin, AE Darling, JA Eisen, DA Coil PeerJ 3, e960, 2015 | 41 | 2015 |
| 4th, Bik HM, Eisen JA AE Darling, G Jospin, E Lowe, FA Matsen PhyloSift: phylogenetic analysis of genomes and metagenomes. PeerJ 2, e243, 2014 | 39 | 2014 |
| Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon S Tokajian, JA Eisen, G Jospin, A Farra, DA Coil Frontiers in cellular and infection microbiology 5, 32, 2015 | 36 | 2015 |
| Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource TJ Sharpton, G Jospin, D Wu, MGI Langille, KS Pollard, JA Eisen BMC bioinformatics 13 (1), 264, 2012 | 31 | 2012 |
| Gene loss and symbiont switching during adaptation to the deep sea in a globally distributed symbiosis JT Osvatic, B Yuen, M Kunert, L Wilkins, B Hausmann, P Girguis, K Lundin, ... The ISME Journal 17 (3), 453-466, 2023 | 30 | 2023 |
| Comparison of whole-genome sequences of Legionella pneumophila in tap water and in clinical strains, Flint, Michigan, USA, 2016 E Garner, CL Brown, DO Schwake, WJ Rhoads, G Arango-Argoty, ... Emerging infectious diseases 25 (11), 2013, 2019 | 29 | 2019 |
