| Pharokka: a fast scalable bacteriophage annotation tool G Bouras, R Nepal, G Houtak, AJ Psaltis, PJ Wormald, S Vreugde Bioinformatics 39 (1), btac776, 2023 | 448 | 2023 |
| Hybracter: enabling scalable, automated, complete and accurate bacterial genome assemblies G Bouras, G Houtak, RR Wick, V Mallawaarachchi, MJ Roach, ... Microbial Genomics 10 (5), 001244, 2024 | 84 | 2024 |
| How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies G Bouras, LM Judd, RA Edwards, S Vreugde, TP Stinear, RR Wick Microbial Genomics 10 (6), 001254, 2024 | 76 | 2024 |
| Dnaapler: A tool to reorient circular microbial genomes G Bouras, SR Grigson, B Papudeshi, V Mallawaarachchi, MJ Roach Journal of Open Source Software 9 (93), 5968, 2024 | 74 | 2024 |
| AllTheBacteria–all bacterial genomes assembled, available, and searchable M Hunt, L Lima, D Anderson, G Bouras, M Hall, J Hawkey, O Schwengers, ... BioRxiv, 2024.03. 08.584059, 2024 | 56 | 2024 |
| Plassembler: an automated bacterial plasmid assembly tool G Bouras, AE Sheppard, V Mallawaarachchi, S Vreugde Bioinformatics 39 (7), btad409, 2023 | 55 | 2023 |
| SARS-CoV-2 Omicron variant escapes neutralizing antibodies and T cell responses more efficiently than other variants in mild COVID-19 convalescents P Garcia-Valtanen, CM Hope, MG Masavuli, AEL Yeow, H Balachandran, ... Cell Reports Medicine 3 (6), 2022 | 47 | 2022 |
| Prophages encoding human immune evasion cluster genes are enriched in Staphylococcus aureus isolated from chronic rhinosinusitis patients with nasal polyps R Nepal, G Houtak, G Shaghayegh, G Bouras, K Shearwin, AJ Psaltis, ... Microbial Genomics 7 (12), 000726, 2021 | 38 | 2021 |
| Phables: from fragmented assemblies to high-quality bacteriophage genomes V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ... Bioinformatics 39 (10), btad586, 2023 | 37 | 2023 |
| APTC-C-SA01: A Novel Bacteriophage Cocktail Targeting Staphylococcus aureus and MRSA Biofilms S Liu, K Hon, GS Bouras, AJ Psaltis, K Shearwin, PJ Wormald, S Vreugde International Journal of Molecular Sciences 23 (11), 6116, 2022 | 30 | 2022 |
| Colloidal silver combating pathogenic Pseudomonas aeruginosa and MRSA in chronic rhinosinusitis S Feizi, CM Cooksley, GS Bouras, CA Prestidge, T Coenye, AJ Psaltis, ... Colloids and Surfaces B: Biointerfaces 202, 111675, 2021 | 28 | 2021 |
| Preclinical Development of a Bacteriophage Cocktail for Treating Multidrug Resistant Pseudomonas aeruginosa Infections S Camens, S Liu, K Hon, GS Bouras, AJ Psaltis, PJ Wormald, S Vreugde Microorganisms 9 (09), 2001, 2021 | 24 | 2021 |
| In vitro and in vivo evaluation of probiotic properties of Corynebacterium accolens isolated from the human nasal cavity MA Menberu, C Cooksley, M Ramezanpour, G Bouras, PJ Wormald, ... Microbiological Research 255, 126927, 2022 | 21 | 2022 |
| A comparison between full-length 16S rRNA Oxford Nanopore sequencing and Illumina V3-V4 16S rRNA sequencing in head and neck cancer tissues K Yeo, J Connell, G Bouras, E Smith, W Murphy, JC Hodge, S Krishnan, ... Archives of Microbiology 206 (6), 1-14, 2024 | 20 | 2024 |
| Staphylococcus aureus biofilm properties and chronic rhinosinusitis severity scores correlate positively with total CD4+ T‐cell frequencies and inversely with its Th1 … G Shaghayegh, C Cooksley, G Bouras, R Nepal, G Houtak, ... Immunology 170 (1), 120-133, 2023 | 20 | 2023 |
| APTC-EC-2A: A Lytic Phage Targeting Multidrug Resistant E. coli Planktonic Cells and Biofilms K Hon, S Liu, S Camens, GS Bouras, AJ Psaltis, PJ Wormald, S Vreugde Microorganisms 10 (1), 102, 2022 | 18 | 2022 |
| Protein structure-informed bacteriophage genome annotation with Phold G Bouras, SR Grigson, M Mirdita, M Heinzinger, B Papudeshi, ... Nucleic Acids Research 54 (1), gkaf1448, 2026 | 17 | 2026 |
| Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2 B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ... Microbial Genomics 9 (9), 001100, 2023 | 16 | 2023 |
| Chitogel following endoscopic sinus surgery promotes a healthy microbiome and reduces postoperative infections A Megow, Y Alsuliman, G Bouras, M Menberu, E Vyskocil, S Vreugde, ... International Forum of Allergy & Rhinology 12 (11), 1362-1376, 2022 | 15 | 2022 |
| S. aureus biofilm metabolic activity correlates positively with patients’ eosinophil frequencies and disease severity in chronic rhinosinusitis G Shaghayegh, C Cooksley, G Bouras, G Houtak, R Nepal, AJ Psaltis, ... Microbes and Infection 25 (8), 105213, 2023 | 14 | 2023 |
