| Community-based benchmarking improves spike rate inference from two-photon calcium imaging data P Berens, J Freeman, T Deneux, N Chenkov, T McColgan, A Speiser, ... PLoS computational biology 14 (5), e1006157, 2018 | 175 | 2018 |
| A database and deep learning toolbox for noise-optimized, generalized spike inference from calcium imaging P Rupprecht, S Carta, A Hoffmann, M Echizen, A Blot, AC Kwan, Y Dan, ... Nature Neuroscience, 1-14, 2021 | 152 | 2021 |
| A virtual reality system to analyze neural activity and behavior in adult zebrafish KH Huang, P Rupprecht, T Frank, K Kawakami, T Bouwmeester, ... Nature Methods 17 (3), 343-351, 2020 | 94 | 2020 |
| Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy P Rupprecht, A Prendergast, C Wyart, RW Friedrich Biomedical optics express 7 (5), 1656-1671, 2016 | 82 | 2016 |
| A tapered channel microfluidic device for comprehensive cell adhesion analysis, using measurements of detachment kinetics and shear stress-dependent motion P Rupprecht*, L Golé*, JP Rieu, C Vézy, R Ferrigno, HC Mertani, ... Biomicrofluidics 6 (1), 014107, 2012 | 59 | 2012 |
| Centripetal integration of past events in hippocampal astrocytes regulated by locus coeruleus P Rupprecht, SN Duss, D Becker, CM Lewis, J Bohacek, F Helmchen Nature Neuroscience 27 (5), 927-939, 2024 | 57* | 2024 |
| Precise Synaptic Balance in the Zebrafish Homolog of Olfactory Cortex P Rupprecht, RW Friedrich Neuron 100 (3), 669-683. e5, 2018 | 54 | 2018 |
| Experience-dependent plasticity of odor representations in the telencephalon of zebrafish GA Jacobson, P Rupprecht, RW Friedrich Current Biology 28 (1), 1-14. e3, 2018 | 48 | 2018 |
| Optimizing and extending light-sculpting microscopy for fast functional imaging in neuroscience P Rupprecht, R Prevedel, F Groessl, WE Haubensak, A Vaziri Biomedical optics express 6 (2), 353-368, 2015 | 25 | 2015 |
| In Vivo Calcium Imaging of CA3 Pyramidal Neuron Populations in Adult Mouse Hippocampus G Schoenfeld*, S Carta*, P Rupprecht, A Ayaz, F Helmchen eNeuro 8 (4), 2021 | 23 | 2021 |
| A deep learning framework for automated and generalized synaptic event analysis PS O'Neill, M Baccino-Calace, P Rupprecht, S Lee, YA Hao, MZ Lin, ... eLife 13, RP98485, 2025 | 8* | 2025 |
| Computational functions of precisely balanced neuronal microcircuits in an olfactory memory network C Meissner-Bernard, B Jenkins, P Rupprecht, EA Bouldoires, F Zenke, ... Cell Reports 44 (3), 2025 | 6 | 2025 |
| A distinct hypothalamus–habenula circuit governs risk preference D Groos, AM Reuss, P Rupprecht, T Stachniak, C Lewis, S Han, ... Nature Neuroscience, 1-13, 2025 | 6 | 2025 |
| Aberrant hippocampal Ca2+ microwaves following synapsin-dependent adeno-associated viral expression of Ca2+ indicators N Masala, M Mittag, EA Giovannetti, DA O'Neil, FJ Distler, P Rupprecht, ... Elife 13, RP93804, 2024 | 6 | 2024 |
| Spike rate inference from mouse spinal cord calcium imaging data P Rupprecht, W Fan, SJ Sullivan, F Helmchen, AD Sdrulla Journal of Neuroscience 45 (18), 2025 | 3* | 2025 |
| Spike inference from calcium imaging data acquired with GCaMP8 indicators P Rupprecht, M Rózsa, X Fang, K Svoboda, F Helmchen bioRxiv, 2025.03. 03.641129, 2025 | 2 | 2025 |
| aDISCO: A Broadly Applicable Method for 3D Microscopy of Archival Paraffin-Embedded Human Tissues AM Reuss, P Rupprecht, D Groos, M Cerisoli, L Nordberg, L Frick, F Voigt, ... bioRxiv, 2025.05. 21.655358, 2025 | 1 | 2025 |
| Representational learning by optimization of neural manifolds in an olfactory memory network B Hu, NZ Temiz, CN Chou, P Rupprecht, C Meissner-Bernard, B Titze, ... bioRxiv, 2024 | 1 | 2024 |
| Pulse dispersion, dielectric mirrors and fluorescence yield: A case report of a two-photon microscope P Rupprecht https://doi.org/10.5281/zenodo.2592464, 2019 | | 2019 |
| Biophysical analysis of neuronal computations in the zebrafish olfactory forebrain P Rupprecht University of Basel, 2018 | | 2018 |
Rainer W. FriedrichGroup Leader, Friedrich Miescher Institute for Biomedical Research; Prof of NeurobiologyVerified email at fmi.ch
