| OptiMol: Optimization of Binding Affinities in Chemical Space for Drug Discovery J Boitreaud, V Mallet, C Oliver, J Waldispuhl Journal of Chemical Information and Modeling 60 (12), 5658-5666, 2020 | 80 | 2020 |
| Augmented base pairing networks encode RNA-small molecule binding preferences C Oliver, V Mallet, RS Gendron, V Reinharz, WL Hamilton, N Moitessier, ... Nucleic Acids Research, 2020 | 63 | 2020 |
| Reverse-complement equivariant networks for dna sequences V Mallet, JP Vert Advances in neural information processing systems 34, 13511-13523, 2021 | 26 | 2021 |
| InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein–protein interactions V Mallet, L Checa Ruano, A Moine Franel, M Nilges, K Druart, G Bouvier, ... Bioinformatics 38 (5), 1261-1268, 2022 | 23 | 2022 |
| quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories V Mallet, M Nilges, G Bouvier Bioinformatics 37 (14), 2064-2065, 2021 | 23 | 2021 |
| RNAmigos2: accelerated structure-based RNA virtual screening with deep graph learning JG Carvajal-Patiño, V Mallet, D Becerra, LF Niño Vasquez, C Oliver, ... Nature Communications 16 (1), 1-12, 2025 | 20 | 2025 |
| Vernal: a tool for mining fuzzy network motifs in RNA C Oliver, V Mallet, P Philippopoulos, WL Hamilton, J Waldispühl Bioinformatics 38 (4), 970-976, 2022 | 19 | 2022 |
| RNAglib: a python package for RNA 2.5 D graphs V Mallet, C Oliver, J Broadbent, WL Hamilton, J Waldispühl Bioinformatics 38 (5), 1458-1459, 2022 | 15 | 2022 |
| AtomSurf: Surface Representation for Learning on Protein Structures V Mallet, Y Miao, S Attaiki, B Correia, M Ovsjanikov The Thirteenth International Conference on Learning Representations (ICLR), 2025 | 10 | 2025 |
| Leveraging binding-site structure for drug discovery with point-cloud methods V Mallet McGill University (Canada), 2019 | 7 | 2019 |
| Approximate network motif mining via graph learning C Oliver, D Chen, V Mallet, P Philippopoulos, K Borgwardt arXiv preprint arXiv:2206.01008, 2022 | 5 | 2022 |
| InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep F Mareuil, R Torchet, LC Ruano, V Mallet, M Nilges, G Bouvier, ... Nucleic Acids Research, gkaf403, 2025 | 3 | 2025 |
| Finding antibodies in cryo-EM maps with CrAI V Mallet, C Rapisarda, H Minoux, M Ovsjanikov Bioinformatics 41 (5), btaf157, 2025 | 3* | 2025 |
| A Comprehensive Library for RNA Structure-Function Modeling L Wyss, V Mallet, C Oliver, W Karroucha, K Borgwardt ICLR 2025 Workshop on AI for Nucleic Acids, 2025 | 2* | 2025 |
| 3D-Based RNA Function Prediction Tools in rnaglib C Oliver, V Mallet, J Waldispühl RNA Design: Methods and Protocols, 153-161, 2024 | 1 | 2024 |
| Machine learning for RNA-targeting drug design W Karroucha, C Oliver, V Stoven, V Mallet arXiv preprint arXiv:2512.15645, 2025 | | 2025 |
| AlignScape, displaying sequence similarity using self-organizing maps I Filella-Merce, V MALLET, E Durand, M Nilges, G Bouvier, R Pellarin Frontiers in Bioinformatics 4, 1321508, 2024 | | 2024 |
| Geometric deep learning for structural bioinformatics V Mallet Université Paris Cité, 2022 | | 2022 |
| Edge-similarity-aware Graph Neural Networks V Mallet, CG Oliver, WL Hamilton arXiv preprint arXiv:2109.09432, 2021 | | 2021 |
Carlos OliverAssistant Professor of Molecular Physiology and Biophysics, Computer Science Vanderbilt UniversityVerified email at vanderbilt.edu
