| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1564 | 2018 |
| Efficient coalescent simulation and genealogical analysis for large sample sizes J Kelleher, AM Etheridge, G McVean PLoS computational biology 12 (5), e1004842, 2016 | 787 | 2016 |
| Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 424 | 2022 |
| Inferring whole-genome histories in large population datasets J Kelleher, Y Wong, AW Wohns, C Fadil, PK Albers, G McVean Nature genetics 51 (9), 1330-1338, 2019 | 353 | 2019 |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 296 | 2021 |
| Efficient pedigree recording for fast population genetics simulation J Kelleher, KR Thornton, J Ashander, PL Ralph PLoS computational biology 14 (11), e1006581, 2018 | 227 | 2018 |
| Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes BC Haller, J Galloway, J Kelleher, PW Messer, PL Ralph Molecular ecology resources 19 (2), 552-566, 2019 | 226 | 2019 |
| A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... elife 9, e54967, 2020 | 196 | 2020 |
| A unified genealogy of modern and ancient genomes AW Wohns, Y Wong, B Jeffery, A Akbari, S Mallick, R Pinhasi, N Patterson, ... Science 375 (6583), eabi8264, 2022 | 171 | 2022 |
| Efficiently summarizing relationships in large samples: a general duality between statistics of genealogies and genomes P Ralph, K Thornton, J Kelleher Genetics 215 (3), 779-797, 2020 | 104 | 2020 |
| cggh/scikit-allel: v1. 3.13 A Miles, MF Rodrigues, P Ralph, J Kelleher, M Schelker, R Pisupati, ... Zenodo, 2021 | 85 | 2021 |
| Accounting for long-range correlations in genome-wide simulations of large cohorts D Nelson, J Kelleher, AP Ragsdale, C Moreau, G McVean, S Gravel PLoS genetics 16 (5), e1008619, 2020 | 69 | 2020 |
| An accurate and scalable collaborative recommender J Kelleher, D Bridge Artificial Intelligence Review 21 (3), 193-213, 2004 | 68 | 2004 |
| A new model for extinction and recolonization in two dimensions: quantifying phylogeography NH Barton, J Kelleher, AM Etheridge Evolution 64 (9), 2701-2715, 2010 | 67 | 2010 |
| Genome graphs AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ... BioRxiv, 101378, 2017 | 64 | 2017 |
| A general and efficient representation of ancestral recombination graphs Y Wong, A Ignatieva, J Koskela, G Gorjanc, AW Wohns, J Kelleher Genetics 228 (1), iyae100, 2024 | 61 | 2024 |
| Genetic hitchhiking in spatially extended populations NH Barton, AM Etheridge, J Kelleher, A Véber Theoretical population biology 87, 75-89, 2013 | 57 | 2013 |
| Demes: a standard format for demographic models G Gower, AP Ragsdale, G Bisschop, RN Gutenkunst, M Hartfield, ... Genetics 222 (3), iyac131, 2022 | 53 | 2022 |
| On the genes, genealogies, and geographies of Quebec L Anderson-Trocmé, D Nelson, S Zabad, A Diaz-Papkovich, I Kryukov, ... Science 380 (6647), 849-855, 2023 | 52 | 2023 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 50 | 2023 |
Peter L RalphDepartment of Data Science, Institute of Ecology and EvolutionVerified email at uoregon.edu
