| E484K as an innovative phylogenetic event for viral evolution: Genomic analysis of the E484K spike mutation in SARS-CoV-2 lineages from Brazil PAG Ferrareze, VB Franceschi, A de Menezes Mayer, GD Caldana, ... Infection, Genetics and Evolution 93, 104941, 2021 | 93 | 2021 |
| Population‐based prevalence surveys during the Covid‐19 pandemic: a systematic review VB Franceschi, AS Santos, AB Glaeser, JC Paiz, GD Caldana, ... Reviews in Medical Virology 31 (4), e2200, 2021 | 68 | 2021 |
| Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil VB Franceschi, GD Caldana, A de Menezes Mayer, GB Cybis, ... BMC genomics 22 (1), 371, 2021 | 47* | 2021 |
| Mutation hotspots and spatiotemporal distribution of SARS-CoV-2 lineages in Brazil, February 2020-2021 VB Franceschi, PAG Ferrareze, RA Zimerman, GB Cybis, CE Thompson Virus Research 304, 198532, 2021 | 31* | 2021 |
| Predominance of the SARS-CoV-2 lineage P. 1 and its sublineage P. 1.2 in patients from the metropolitan region of Porto Alegre, Southern Brazil in March 2021 VB Franceschi, GD Caldana, C Perin, A Horn, C Peter, GB Cybis, ... Pathogens 10 (8), 988, 2021 | 20 | 2021 |
| Model design for nonparametric phylodynamic inference and applications to pathogen surveillance X Didelot, V Franceschi, SDW Frost, A Dennis, EM Volz Virus evolution 9 (1), vead028, 2023 | 14 | 2023 |
| Phylogenomic early warning signals for SARS-CoV-2 epidemic waves KO Drake, O Boyd, VB Franceschi, RM Colquhoun, NAF Ellaby, EM Volz EBioMedicine 100, 104939, 2024 | 6 | 2024 |
| Molecular evolution and structural analyses of the spike glycoprotein from Brazilian SARS-CoV-2 genomes: the impact of selected mutations PA Gröhs Ferrareze, RA Zimerman, VB Franceschi, GD Caldana, PA Netz, ... Journal of Biomolecular Structure and Dynamics 41 (7), 3110-3128, 2023 | 6* | 2023 |
| Phylogenetic signatures reveal multilevel selection and fitness costs in SARS-CoV-2 VB Franceschi, E Volz Wellcome Open Research 9, 2024 | 5 | 2024 |
| Caracterização genômica do Betacoronavirus SARS-CoV-2 para compreensão da distribuição de linhagens e padrões de espalhamento geográfico no estado do Rio Grande do Sul e no … VB Franceschi | 1 | 2022 |
| Unusual features in a child with Marshall-Smith syndrome due to a novel NFIX variant: Evidence for an abnormal protein function D Deconte, CBL dos Santos, CO de Morais, TM Yonamine, LT Nogueira, ... Gene Reports 22, 100991, 2021 | 1 | 2021 |
| Evidence for circulation of high-virulence HIV-1 subtype B variants in the United Kingdom VB Franceschi, KO Drake, DF Bibby, CA Sabin, DT Dunn, JL Mbisa, ... Virus Evolution 11 (1), veaf048, 2025 | | 2025 |
| Untangling the effects of within-host and between-host natural selection in viruses with applications to evolution of HIV-1 co-receptor usage KO Drake, VB Franceschi, FF Nascimento, EM Volz bioRxiv, 2025.05. 08.652803, 2025 | | 2025 |
| Searching for Fast-Growing HIV Variants Using Scalable Phylodynamic Methods VB Franceschi, KO Drake, E Volz 9TH INTERNATIONAL CONFERENCE ON INFECTIOUS DISEASE DYNAMICS P, P1.194, 2023 | | 2023 |
