| Protein secondary structure prediction using three neural networks and a segmental semi Markov model SA Malekpour, S Naghizadeh, H Pezeshk, M Sadeghi, C Eslahchi Mathematical Biosciences 217 (2), 145-150, 2009 | 42 | 2009 |
| MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples SA Malekpour, H Pezeshk, M Sadeghi Scientific reports 8 (1), 4009, 2018 | 24 | 2018 |
| LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks SA Malekpour, AR Alizad-Rahvar, M Sadeghi BMC bioinformatics 21 (1), 318, 2020 | 15 | 2020 |
| wpLogicNet: logic gate and structure inference in gene regulatory networks SA Malekpour, M Shahdoust, R Aghdam, M Sadeghi Bioinformatics 39 (2), btad072, 2023 | 13 | 2023 |
| A segmental semi markov model for protein secondary structure prediction SA Malekpour, S Naghizadeh, H Pezeshk, M Sadeghi, C Eslahchi Mathematical biosciences 221 (2), 130-135, 2009 | 11 | 2009 |
| Phylogenetic and phylodynamic study of Human T-cell lymphotropic virus Type 1 (HTLV-1) in Iran CR Pashabayg, N Momenifar, SA Malekpour, M Sadeghi, AR Foroushani, ... Infection, Genetics and Evolution 85, 104426, 2020 | 10 | 2020 |
| Molecular evolution and phylodynamics of hepatitis B virus infection circulating in Iran SH Mozhgani, SA Malekpour, M Norouzi, F Ramezani, SA Rezaee, ... Archives of Virology 163 (6), 1479-1488, 2018 | 8 | 2018 |
| MGP-HMM: Detecting genome-wide CNVs using an HMM for modeling mate pair insertion sizes and read counts SA Malekpour, H Pezeshk, M Sadeghi Mathematical biosciences 279, 53-62, 2016 | 8 | 2016 |
| A modified bidirectional hidden Markov model and its application in protein secondary structure prediction H Pezeshk, S Naghizadeh, SA Malekpour, C Eslahchi, M Sadeghi 2010 2nd International Conference on Advanced Computer Control 3, 535-538, 2010 | 8 | 2010 |
| Unraveling the genetic architecture of blood unfolded p-53 among non-demented elderlies: novel candidate genes for early Alzheimer's disease A Yaghoobi, SA Malekpour BMC genomics 25 (1), 440, 2024 | 7 | 2024 |
| PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities SA Malekpour, H Pezeshk, M Sadeghi BMC bioinformatics 18 (1), 30, 2016 | 6 | 2016 |
| Epidemic history of hepatitis C virus among patients with inherited bleeding disorders in Iran K Samimi-Rad, R Rahimnia, M Sadeghi, SA Malekpour, M Marzban, ... Plos one 11 (9), e0162492, 2016 | 6 | 2016 |
| Improving gene isoform quantification with miniQuant H Li, D Wang, Q Gao, P Tan, Y Wang, X Cai, A Li, Y Zhao, AL Thurman, ... Nature Biotechnology, 1-13, 2025 | 5 | 2025 |
| A clustering approach for estimating parameters of a profile hidden Markov model R Aghdam, H Pezeshk, SA Malekpour, S Shemehsavar, C Eslahchi International journal of data mining and bioinformatics 8 (1), 66-82, 2013 | 5 | 2013 |
| Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms SA Malekpour, L Haghverdi, M Sadeghi Briefings in Bioinformatics 25 (3), 2024 | 3 | 2024 |
| Modeling the probability distribution of the bacterial burst size via a game-theoretic approach SA Malekpour, P Pakzad, MH Foroughmand-Araabi, S Goliaei, ... Journal of Bioinformatics and Computational Biology 16 (04), 1850012, 2018 | 1 | 2018 |
| Inferring the selective history of CNVs using a maximum likelihood model SA Malekpour, A Kalirad, S Majidian Genome biology and evolution 17 (3), evaf050, 2025 | | 2025 |
| Unraveling Genetic Architecture of Blood Unfolded p-53: Novel Candidate Genes for Early Alzheimer's Disease A Yaghoobi, SA Malekpour | | 2023 |
| BOOSTING ACCURACY OF HIDDEN MARKOV MODELS IN PROTEIN STRUCTURE PREDICTION BY CATEGORIZING AMINO ACIDS'SOLVENT ACCESSIBILITY SA Malekpour, H Pezeshk, M Sadeghi, C Eslahchi | | 2014 |
| A Bidirectional Bayesian Monte Carlo Approach for Estimating Parameters of a Profile Hidden Markov Model R Aghdam, H Pezeshk, SA Malekpour, S Shemehsavar, M Sadeghi, ... Applied Science Segment 1 (2), 2010 | | 2010 |
Mehdi SadeghiNational institute of genetic engineering and biotechnologyVerified email at nigeb.ac.ir
