| Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota CCR Smith, LK Snowberg, J Gregory Caporaso, R Knight, DI Bolnick The ISME journal 9 (11), 2515-2526, 2015 | 383 | 2015 |
| Wolbachia do not live by reproductive manipulation alone: infection polymorphism in Drosophila suzukii and D. subpulchrella CA Hamm, DJ Begun, A Vo, CCR Smith, P Saelao, AO Shaver, J Jaenike, ... Molecular ecology 23 (19), 4871-4885, 2014 | 139 | 2014 |
| The gut microbiota response to helminth infection depends on host sex and genotype F Ling, N Steinel, J Weber, L Ma, C Smith, D Correa, B Zhu, D Bolnick, ... The ISME Journal 14 (5), 1141-1153, 2020 | 62 | 2020 |
| Migratory divides coincide with reproductive barriers across replicated avian hybrid zones above the Tibetan Plateau ESC Scordato, CCR Smith, GA Semenov, Y Liu, MR Wilkins, W Liang, ... Ecology letters 23 (2), 231-241, 2020 | 54 | 2020 |
| Dispersal inference from population genetic variation using a convolutional neural network CCR Smith, S Tittes, PL Ralph, AD Kern Genetics 224 (2), iyad068, 2023 | 53 | 2023 |
| Genetics of alternative splicing evolution during sunflower domestication CCR Smith, S Tittes, JP Mendieta, E Collier-zans, HC Rowe, ... Proceedings of the National Academy of Sciences 115 (26), 6768-6773, 2018 | 53 | 2018 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 50 | 2023 |
| Effects of assortative mate choice on the genomic and morphological structure of a hybrid zone between two bird subspecies GA Semenov, ESC Scordato, DR Khaydarov, CCR Smith, NC Kane, ... Molecular ecology 26 (22), 6430-6444, 2017 | 49 | 2017 |
| Demographic inference in barn swallows using whole‐genome data shows signal for bottleneck and subspecies differentiation during the Holocene CCR Smith, SM Flaxman, ESC Scordato, NC Kane, AK Hund, BM Sheta, ... Molecular ecology 27 (21), 4200-4212, 2018 | 44 | 2018 |
| A migratory divide spanning two continents is associated with genomic and ecological divergence SP Turbek, DR Schield, ESC Scordato, A Contina, XW Da, Y Liu, Y Liu, ... Evolution 76 (4), 722-736, 2022 | 34 | 2022 |
| Sex‐linked genetic diversity and differentiation in a globally distributed avian species complex DR Schield, ESC Scordato, CCR Smith, JK Carter, SI Cherkaoui, ... Molecular Ecology 30 (10), 2313-2332, 2021 | 22 | 2021 |
| Unifying Theoretical and Empirical Perspectives on Genomic Differentiation GA Semenov, RJ Safran, CCR Smith, SP Turbek, SP Mullen, SM Flaxman Trends in ecology & evolution 34 (11), 987-995, 2019 | 21 | 2019 |
| Gene expression and alternative splicing contribute to adaptive divergence of ecotypes PA Innes, AM Goebl, CCR Smith, K Rosenberger, NC Kane Heredity 132 (3), 120-132, 2024 | 20 | 2024 |
| Leveraging whole genome sequencing data for demographic inference with approximate Bayesian computation CCR Smith, SM Flaxman Molecular ecology resources, 2019 | 19 | 2019 |
| disperseNN2: a neural network for estimating dispersal distance from georeferenced polymorphism data CCR Smith, AD Kern BMC bioinformatics 24 (1), 385, 2023 | 13 | 2023 |
| Population genetics meets ecology: A guide to individual‐based simulations in continuous landscapes ET Chevy, J Min, V Caudill, SE Champer, BC Haller, CT Rehmann, ... Ecology and Evolution 15 (4), e71098, 2025 | 12 | 2025 |
| Aberrant RNA splicing due to genetic incompatibilities in sunflower hybrids CCR Smith, LH Rieseberg, BS Hulke, NC Kane Evolution 75 (11), 2747-2758, 2021 | 12* | 2021 |
| Accessible, realistic genome simulation with selection using stdpopsim G Gower, NS Pope, MF Rodrigues, S Tittes, LN Tran, O Alam, ... bioRxiv, 2025 | 5 | 2025 |
| Estimation of spatial demographic maps from polymorphism data using a neural network CCR Smith, G Patterson, PL Ralph, AD Kern Molecular Ecology Resources 24 (7), e14005, 2024 | 5 | 2024 |
| Machine learning speeds up genetic structure analysis CCR Smith Nature Computational Science 3 (7), 580-581, 2023 | 1 | 2023 |
