| Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing DW Eyre, ML Cule, DJ Wilson, D Griffiths, A Vaughan, L O'Connor, CLC Ip, ... New England Journal of Medicine 369 (13), 1195-1205, 2013 | 791 | 2013 |
| MinION Analysis and Reference Consortium: Phase 1 data release and analysis CLC Ip, M Loose, JR Tyson, M de Cesare, BL Brown, M Jain, RM Leggett, ... F1000Research 4, 1075, 2015 | 381 | 2015 |
| Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data N Stoesser, EM Batty, DW Eyre, M Morgan, DH Wyllie, C Del Ojo Elias, ... Journal of Antimicrobial Chemotherapy 68 (10), 2234-2244, 2013 | 380 | 2013 |
| Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7 (2), 10.1128/mbio. 02162-15, 2016 | 359 | 2016 |
| Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease BC Young, T Golubchik, EM Batty, R Fung, H Larner-Svensson, ... Proceedings of the National Academy of Sciences 109 (12), 4550-4555, 2012 | 354 | 2012 |
| A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance DW Eyre, T Golubchik, NC Gordon, R Bowden, P Piazza, EM Batty, ... BMJ open 2 (3), e001124, 2012 | 308 | 2012 |
| Within-host evolution of Staphylococcus aureus during asymptomatic carriage T Golubchik, EM Batty, RR Miller, H Farr, BC Young, H Larner-Svensson, ... PloS one 8 (5), e61319, 2013 | 256 | 2013 |
| Microevolutionary analysis of Clostridium difficile genomes to investigate transmission X Didelot, DW Eyre, M Cule, CLC Ip, MA Ansari, D Griffiths, A Vaughan, ... Genome biology 13 (12), R118, 2012 | 244 | 2012 |
| Improved workflows for high throughput library preparation using the transposome-based Nextera system S Lamble, E Batty, M Attar, D Buck, R Bowden, G Lunter, D Crook, ... BMC biotechnology 13 (1), 104, 2013 | 186 | 2013 |
| Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus RG Everitt, X Didelot, EM Batty, RR Miller, K Knox, BC Young, R Bowden, ... Nature communications 5 (1), 3956, 2014 | 179 | 2014 |
| Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community … N Stoesser, A Giess, EM Batty, AE Sheppard, AS Walker, DJ Wilson, ... Antimicrobial agents and chemotherapy 58 (12), 7347-7357, 2014 | 163 | 2014 |
| Recombinational Switching of the Clostridium difficile S-Layer and a Novel Glycosylation Gene Cluster Revealed by Large-Scale Whole-Genome Sequencing KE Dingle, X Didelot, MA Ansari, DW Eyre, A Vaughan, D Griffiths, CLC Ip, ... The Journal of infectious diseases 207 (4), 675-686, 2013 | 122 | 2013 |
| Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes I Schulte, EM Batty, JCM Pole, KA Blood, S Mo, SL Cooke, C Ng, ... BMC genomics 13 (1), 719, 2012 | 102 | 2012 |
| A modified RNA-Seq approach for whole genome sequencing of RNA viruses from faecal and blood samples EM Batty, THN Wong, A Trebes, K Argoud, M Attar, D Buck, CLC Ip, ... PloS one 8 (6), e66129, 2013 | 86 | 2013 |
| The role of tandem duplicator phenotype in tumour evolution in high‐grade serous ovarian cancer CKY Ng, SL Cooke, K Howe, S Newman, J Xian, J Temple, EM Batty, ... The Journal of pathology 226 (5), 703-712, 2012 | 83 | 2012 |
| Antiviral efficacy of molnupiravir versus ritonavir-boosted nirmatrelvir in patients with early symptomatic COVID-19 (PLATCOV): an open-label, phase 2, randomised, controlled … WHK Schilling, P Jittamala, JA Watson, S Boyd, V Luvira, T Siripoon, ... The Lancet Infectious Diseases 24 (1), 36-45, 2024 | 72 | 2024 |
| Long-read whole genome sequencing and comparative analysis of six strains of the human pathogen Orientia tsutsugamushi EM Batty, S Chaemchuen, S Blacksell, AL Richards, D Paris, R Bowden, ... PLoS neglected tropical diseases 12 (6), e0006566, 2018 | 72 | 2018 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... Evolutionary history of the global emergence of the Escherichia coli …, 0 | 62 | |
| Large duplications at reciprocal translocation breakpoints that might be the counterpart of large deletions and could arise from stalled replication bubbles KD Howarth, JCM Pole, JC Beavis, EM Batty, S Newman, GR Bignell, ... Genome research 21 (4), 525-534, 2011 | 47 | 2011 |
| Modernizing Medical Microbiology Informatics Group (MMMIG). 2016. Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131. mBio 7: e02162 N Stoesser, AE Sheppard, L Pankhurst, N De Maio, CE Moore, R Sebra, ... MBio 7, e02162, 0 | 46 | |
