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Nikolay Shirokikh
Nikolay Shirokikh
Head of the RNA Multi-Omics and Design Lab, Australian Centre for RNA Therapeutics in Cancer, UWA
Verified email at uwa.edu.au
Title
Cited by
Cited by
Year
Dynamics of ribosome scanning and recycling revealed by translation complex profiling
SK Archer, NE Shirokikh, TH Beilharz, T Preiss
Nature 535 (7613), 570-574, 2016
2352016
Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo
YN Cheung, D Maag, SF Mitchell, CA Fekete, MA Algire, JE Takacs, ...
Genes & development 21 (10), 1217-1230, 2007
2322007
Translation initiation by cap‐dependent ribosome recruitment: recent insights and open questions
NE Shirokikh, T Preiss
Wiley Interdisciplinary Reviews: RNA 9 (4), e1473, 2018
1762018
Translation initiation by factor-independent binding of eukaryotic ribosomes to internal ribosomal entry sites
AV Pisarev, NE Shirokikh, CUT Hellen
Comptes rendus biologies 328 (7), 589-605, 2005
1652005
Insights into the biogenesis and potential functions of exonic circular RNA
C Ragan, GJ Goodall, NE Shirokikh, T Preiss
Scientific reports 9 (1), 2048, 2019
1582019
Selective translation complex profiling reveals staged initiation and co-translational assembly of initiation factor complexes
S Wagner, A Herrmannová, V Hronová, S Gunišová, ND Sen, RD Hannan, ...
Molecular cell 79 (4), 546-560. e7, 2020
1472020
The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH
IB Lomakin, NE Shirokikh, MM Yusupov, CUT Hellen, TV Pestova
The EMBO journal 25 (1), 196, 2005
1362005
The eIF1A C‐terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo
CA Fekete, DJ Applefield, SA Blakely, N Shirokikh, T Pestova, JR Lorsch, ...
The EMBO journal 24 (20), 3588-3601, 2005
1242005
Poly (A) leader of eukaryotic mRNA bypasses the dependence of translation on initiation factors
NE Shirokikh, AS Spirin
Proceedings of the National Academy of Sciences 105 (31), 10738-10743, 2008
1022008
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications
P Acera Mateos, A J Sethi, A Ravindran, A Srivastava, K Woodward, ...
Nature Communications 15 (1), 3899, 2024
872024
Probing the closed-loop model of mRNA translation in living cells
SK Archer, NE Shirokikh, CV Hallwirth, TH Beilharz, T Preiss
RNA biology 12 (3), 248-254, 2015
862015
Translation complex profile sequencing to study the in vivo dynamics of mRNA–ribosome interactions during translation initiation, elongation and termination
NE Shirokikh, SK Archer, TH Beilharz, D Powell, T Preiss
Nature protocols 12 (4), 697-731, 2017
672017
Quantitative analysis of ribosome–mRNA complexes at different translation stages
NE Shirokikh, EZ Alkalaeva, KS Vassilenko, ZA Afonina, OM Alekhina, ...
Nucleic acids research 38 (3), e15-e15, 2010
502010
Control of translation at the initiation phase during glucose starvation in yeast
Y Janapala, T Preiss, NE Shirokikh
International Journal of Molecular Sciences 20 (16), 4043, 2019
482019
Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage
SK Archer, NE Shirokikh, T Preiss
BMC genomics 15 (1), 401, 2014
432014
Insight into the structural organization of the omega leader of TMV RNA: the role of various regions of the sequence in the formation of a compact structure of the omega RNA
SC Agalarov, EA Sogorin, NE Shirokikh, AS Spirin
Biochemical and biophysical research communications 404 (1), 250-253, 2011
272011
Translational control in cell ageing: an update
K Woodward, NE Shirokikh
Biochemical Society Transactions 49 (6), 2853-2869, 2021
232021
Simultaneous identification of m6A and m5C reveals coordinated RNA modification at single-molecule resolution
PA Mateos, AJ Sethi, A Ravindran, A Srivastava, M Kanchi, S Mahmud, ...
BioRxiv, 2022.03. 14.484124, 2022
222022
Migration of small ribosomal subunits on the 5′ untranslated regions of capped messenger RNA
NE Shirokikh, YS Dutikova, MA Staroverova, RD Hannan, T Preiss
International Journal of Molecular Sciences 20 (18), 4464, 2019
202019
Chemical and enzymatic probing of spatial structure of the omega leader of tobacco mosaic virus RNA
NE Shirokikh, SC Agalarov, AS Spirin
Biochemistry (Moscow) 75 (4), 405-411, 2010
192010
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Articles 1–20