| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 875 | 2014 |
| Federated collaborative filtering for privacy-preserving personalized recommendation system M Ammad-Ud-Din, E Ivannikova, SA Khan, W Oyomno, Q Fu, KE Tan, ... arXiv preprint arXiv:1901.09888, 2019 | 404 | 2019 |
| Prediction of human population responses to toxic compounds by a collaborative competition F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ... Nature biotechnology 33 (9), 933-940, 2015 | 127 | 2015 |
| Integrative and personalized QSAR analysis in cancer by kernelized Bayesian matrix factorization M Ammad-Ud-Din, E Georgii, M Gonen, T Laitinen, O Kallioniemi, ... Journal of chemical information and modeling 54 (8), 2347-2359, 2014 | 123 | 2014 |
| Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization M Ammad-Ud-Din, SA Khan, D Malani, A Murumägi, O Kallioniemi, ... Bioinformatics 32 (17), i455-i463, 2016 | 111 | 2016 |
| Federated multi-view matrix factorization for personalized recommendations A Flanagan, W Oyomno, A Grigorievskiy, KE Tan, SA Khan, ... In: Hutter F., Kersting K., Lijffijt J., Valera I. (eds) Machine Learning …, 2021 | 101 | 2021 |
| Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ... Nature communications 7 (1), 12460, 2016 | 99 | 2016 |
| Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression M Ammad-Ud-Din, SA Khan, K Wennerberg, T Aittokallio Bioinformatics 33 (14), i359-i368, 2017 | 83 | 2017 |
| A payload optimization method for federated recommender systems FK Khan, A Flanagan, KE Tan, Z Alamgir, M Ammad-Ud-Din Proceedings of the 15th ACM Conference on Recommender Systems, 432-442, 2021 | 42 | 2021 |
| Bayesian multi-source regression and monocyte-associated gene expression predict BCL-2 inhibitor resistance in acute myeloid leukemia BS White, SA Khan, MJ Mason, M Ammad-Ud-Din, S Potdar, D Malani, ... NPJ precision oncology 5 (1), 71, 2021 | 39 | 2021 |
| GFA: exploratory analysis of multiple data sources with group factor analysis E LeppÃĪaho, S Kaski Journal of Machine Learning Research 18 (39), 1-5, 2017 | 35 | 2017 |
| Interactive elicitation of knowledge on feature relevance improves predictions in small data sets L Micallef, I Sundin, P Marttinen, M Ammad-Ud-Din, T Peltola, M Soare, ... Proceedings of the 22nd International Conference on Intelligent User …, 2017 | 25 | 2017 |
| Modeling public sentiments about JUUL flavors on Twitter through machine learning A Malik, MI Khan, H Karbasian, M Nieminen, M Ammad-Ud-Din, SA Khan Nicotine & Tobacco Research 23 (11), 1869-1879, 2021 | 16 | 2021 |
| An integrative machine learning approach to discovering multi-level molecular mechanisms of obesity using data from monozygotic twin pairs M Kibble, SA Khan, M Ammad-Ud-Din, S Bollepalli, T Palviainen, J Kaprio, ... Royal Society open science 7 (10), 200872, 2020 | 15 | 2020 |
| Communication-efficient federated neural collaborative filtering with multi-armed bandits W Ali, M Ammad-Ud-Din, X Zhou, Y Zhang, J Shao ACM Transactions on Recommender Systems 4 (1), 1-28, 2025 | 10 | 2025 |
| Regression with n→ 1 by expert knowledge elicitation M Soare, M Ammad-Ud-Din, S Kaski 2016 15th IEEE International Conference on Machine Learning and Applications …, 2016 | 10 | 2016 |
| NC I DREA M Community, JJ Collins, D JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Gallahan, D. Singer, J. Saez-Rodriguez, S. Kaski, JW Gray, and G …, 2014 | 8 | 2014 |
| tensorBF: an R package for Bayesian tensor factorization SA Khan, M Ammad-ud-din bioRxiv, 097048, 2016 | 4 | 2016 |
| Comparative Analysis of independent ex vivo functional drug screens identifies predictive biomarkers of BCL-2 inhibitor response in AML BS White, SA Khan, S Potdar, MJ Mason, CE Tognon, BJ Druker, ... Blood 132, 2763, 2018 | 2 | 2018 |
| Generation of personalized recommendations M AMMAD-UD-DIN, ALI Suleiman, A Flanagan, KE TAN US Patent App. 17/945,332, 2023 | 1 | 2023 |
