| Proteogenomics of non-smoking lung cancer in East Asia delineates molecular signatures of pathogenesis and progression YJ Chen, TI Roumeliotis, YH Chang, CT Chen, CL Han, MH Lin, ... Cell 182 (1), 226-244. e17, 2020 | 349 | 2020 |
| Edge congestion and topological properties of crossed cubes CP Chang, TY Sung, LH Hsu IEEE Transactions on Parallel and Distributed Systems 11 (1), 64-80, 2000 | 221 | 2000 |
| Various criteria in the evaluation of biomedical named entity recognition RTH Tsai, SH Wu, WC Chou, YC Lin, D He, J Hsiang, TY Sung, WL Hsu BMC bioinformatics 7 (1), 92, 2006 | 165 | 2006 |
| Predicting RNA-binding sites of proteins using support vector machines and evolutionary information CW Cheng, ECY Su, JK Hwang, TY Sung, WL Hsu BMC bioinformatics 9 (Suppl 12), S6, 2008 | 161 | 2008 |
| NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition RTH Tsai, CL Sung, HJ Dai, HC Hung, TY Sung, WL Hsu BMC bioinformatics 7 (Suppl 5), S11, 2006 | 151 | 2006 |
| IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation CC Tsou, CF Tsai, YH Tsui, PR Sudhir, YT Wang, YJ Chen, JY Chen, ... Molecular & Cellular Proteomics 9 (1), 131-144, 2010 | 140 | 2010 |
| Sequential phosphoproteomic enrichment through complementary metal-directed immobilized metal ion affinity chromatography CF Tsai, CC Hsu, JN Hung, YT Wang, WK Choong, MY Zeng, PY Lin, ... Analytical chemistry 86 (1), 685-693, 2014 | 132 | 2014 |
| A maximum entropy approach to biomedical named entity recognition YF Lin, TH Tsai, WC Chou, KP Wu, TY Sung, WL Hsu Proceedings of the 4th International Conference on Data Mining in …, 2004 | 127 | 2004 |
| Multi-Q: a fully automated tool for multiplexed protein quantitation WT Lin, WN Hung, YH Yian, KP Wu, CL Han, YR Chen, YJ Chen, ... Journal of Proteome Research 5 (9), 2328-2338, 2006 | 121 | 2006 |
| Protein subcellular localization prediction based on compartment-specific features and structure conservation ECY Su, HS Chiu, A Lo, JK Hwang, TY Sung, WL Hsu BMC bioinformatics 8 (1), 330, 2007 | 98 | 2007 |
| A data-independent acquisition-based global phosphoproteomics system enables deep profiling RB Kitata, WK Choong, CF Tsai, PY Lin, BS Chen, YC Chang, ... Nature Communications 12 (1), 2539, 2021 | 89 | 2021 |
| Metabolite identification for mass spectrometry-based metabolomics using multiple types of correlated ion information KS Lynn, ML Cheng, YR Chen, C Hsu, A Chen, TM Lih, HY Chang, ... Analytical chemistry 87 (4), 2143-2151, 2015 | 87 | 2015 |
| MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach KS Lynn, CC Chen, TM Lih, CW Cheng, WC Su, CH Chang, CY Cheng, ... Analytical Chemistry 87 (4), 2466-2473, 2015 | 83 | 2015 |
| N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding T Pitti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung Scientific reports 9 (1), 15975, 2019 | 79 | 2019 |
| An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion YT Wang, CF Tsai, TC Hong, CC Tsou, PY Lin, SH Pan, TM Hong, ... Journal of proteome research 9 (11), 5582-5597, 2010 | 74 | 2010 |
| BIOSMILE: a semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features RTH Tsai, WC Chou, YS Su, YC Lin, CL Sung, HJ Dai, ITH Yeh, W Ku, ... BMC bioinformatics 8 (1), 325, 2007 | 74 | 2007 |
| Predicting helix–helix interactions from residue contacts in membrane proteins A Lo, YY Chiu, EA Rødland, PC Lyu, TY Sung, WL Hsu Bioinformatics 25 (8), 996-1003, 2009 | 73 | 2009 |
| A semi-automatic method for annotating a biomedical proposition bank WC Chou, RTH Tsai, YS Su, W Ku, TY Sung, WL Hsu Proceedings of the workshop on frontiers in linguistically annotated corpora …, 2006 | 70 | 2006 |
| Rapid high-pH reverse phase StageTip for sensitive small-scale membrane proteomic profiling BRT Dimayacyac-Esleta, CF Tsai, RB Kitata, PY Lin, WK Choong, TD Lin, ... Analytical chemistry 87 (24), 12016-12023, 2015 | 69 | 2015 |
| HYPROSP II-A knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence HN Lin, JM Chang, KP Wu, TY Sung, WL Hsu Bioinformatics 21 (15), 3227-3233, 2005 | 68 | 2005 |
