| NAMD2: greater scalability for parallel molecular dynamics L Kalé, R Skeel, M Bhandarkar, R Brunner, A Gursoy, N Krawetz, ... Journal of Computational Physics 151 (1), 283-312, 1999 | 3094 | 1999 |
| Principles of protein− protein interactions: what are the preferred ways for proteins to interact? O Keskin, A Gursoy, B Ma, R Nussinov Chemical reviews 108 (4), 1225-1244, 2008 | 889 | 2008 |
| NAMD: a parallel, object-oriented molecular dynamics program MT Nelson, W Humphrey, A Gursoy, A Dalke, LV Kalé, RD Skeel, ... The International Journal of Supercomputer Applications and High Performance …, 1996 | 853 | 1996 |
| Predicting protein–protein interactions from the molecular to the proteome level O Keskin, N Tuncbag, A Gursoy Chemical reviews 116 (8), 4884-4909, 2016 | 424 | 2016 |
| Transient protein–protein interactions SE Acuner Ozbabacan, HB Engin, A Gursoy, O Keskin Protein Engineering, Design & Selection 24 (9), 635-648, 2011 | 403 | 2011 |
| Ras conformational ensembles, allostery, and signaling S Lu, H Jang, S Muratcioglu, A Gursoy, O Keskin, R Nussinov, J Zhang Chemical reviews 116 (11), 6607-6665, 2016 | 372 | 2016 |
| Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM N Tuncbag, A Gursoy, R Nussinov, O Keskin Nature protocols 6 (9), 1341-1354, 2011 | 318 | 2011 |
| Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy N Tuncbag, A Gursoy, O Keskin Bioinformatics 25 (12), 1513-1520, 2009 | 312 | 2009 |
| Human cancer protein-protein interaction network: a structural perspective G Kar, A Gursoy, O Keskin PLoS computational biology 5 (12), e1000601, 2009 | 298 | 2009 |
| PRISM: protein interactions by structural matching U Ogmen, O Keskin, AS Aytuna, R Nussinov, A Gursoy Nucleic acids research 33 (suppl_2), W331-W336, 2005 | 264 | 2005 |
| Prediction of protein–protein interactions by combining structure and sequence conservation in protein interfaces AS Aytuna, A Gursoy, O Keskin Bioinformatics 21 (12), 2850-2855, 2005 | 254 | 2005 |
| GTP-dependent K-Ras dimerization S Muratcioglu, TS Chavan, BC Freed, H Jang, L Khavrutskii, RN Freed, ... Structure 23 (7), 1325-1335, 2015 | 241 | 2015 |
| HotPoint: hot spot prediction server for protein interfaces N Tuncbag, O Keskin, A Gursoy Nucleic acids research 38 (suppl_2), W402-W406, 2010 | 241 | 2010 |
| PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes A Baspinar, E Cukuroglu, R Nussinov, O Keskin, A Gursoy Nucleic acids research 42 (W1), W285-W289, 2014 | 231 | 2014 |
| Allostery and population shift in drug discovery G Kar, O Keskin, A Gursoy, R Nussinov Current opinion in pharmacology 10 (6), 715-722, 2010 | 227 | 2010 |
| Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ... Bioinformatics 18 (7), 996-1003, 2002 | 222 | 2002 |
| A survey of available tools and web servers for analysis of protein–protein interactions and interfaces N Tuncbag, G Kar, O Keskin, A Gursoy, R Nussinov Briefings in bioinformatics 10 (3), 217-232, 2009 | 214 | 2009 |
| Hot spots in protein–protein interfaces: Towards drug discovery E Cukuroglu, HB Engin, A Gursoy, O Keskin Progress in biophysics and molecular biology 116 (2-3), 165-173, 2014 | 206 | 2014 |
| Topological properties of protein interaction networks from a structural perspective A Gursoy, O Keskin, R Nussinov Biochemical Society Transactions 36 (6), 1398-1403, 2008 | 190 | 2008 |
| The architecture of the TIR domain signalosome in the toll-like receptor-4 signaling pathway E Guven-Maiorov, O Keskin, A Gursoy, C VanWaes, Z Chen, CJ Tsai, ... Scientific reports 5 (1), 13128, 2015 | 147 | 2015 |
