| Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 426 | 2022 |
| Towards practical and robust DNA-based data archiving using the yin–yang codec system Z Ping, S Chen, G Zhou, X Huang, SJ Zhu, H Zhang, HH Lee, Z Lan, J Cui, ... Nature Computational Science 2 (4), 234-242, 2022 | 141 | 2022 |
| scrm: efficiently simulating long sequences using the approximated coalescent with recombination PR Staab, S Zhu, D Metzler, G Lunter Bioinformatics, btu861, 2015 | 110 | 2015 |
| Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data SJ Zhu, J Almagro-Garcia, G McVean Bioinformatics, btx530, 2017 | 85 | 2017 |
| Carbon-based archiving: current progress and future prospects of DNA-based data storage Z Ping, D Ma, X Huang, S Chen, L Liu, F Guo, SJ Zhu, Y Shen GigaScience 8 (6), giz075, 2019 | 80 | 2019 |
| Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms S Auburn, S Getachew, RD Pearson, R Amato, O Miotto, H Trimarsanto, ... The Journal of infectious diseases 220 (11), 1738-1749, 2019 | 76 | 2019 |
| The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria SJ Zhu, JA Hendry, J Almagro-Garcia, RD Pearson, R Amato, A Miles, ... elife 8, e40845, 2019 | 72 | 2019 |
| RTS,S/AS01 malaria vaccine mismatch observed among Plasmodium falciparum isolates from southern and central Africa and globally JC Pringle, G Carpi, J Almagro-Garcia, SJ Zhu, T Kobayashi, M Mulenga, ... Scientific Reports 8, 2018 | 59 | 2018 |
| Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent S Zhu, JH Degnan Systematic Biology 66 (2), 283-298, 2017 | 50 | 2017 |
| Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees S Zhu, JH Degnan, SJ Goldstien, B Eldon BMC Bioinformatics 16 (292), 2015 | 44 | 2015 |
| Neonatal microRNA profile determines endothelial function in offspring of hypertensive pregnancies GZ Yu, S Reilly, AJ Lewandowski, CYL Aye, LJ Simpson, LD Newton, ... Hypertension 72 (4), 937-945, 2018 | 39 | 2018 |
| Clades, clans, and reciprocal monophyly under neutral evolutionary models S Zhu, JH Degnan, M Steel Theoretical Population Biology, 2011 | 32 | 2011 |
| Bioactive lipid lysophosphatidic acid species are associated with disease progression in idiopathic pulmonary fibrosis M Neighbors, Q Li, SJ Zhu, J Liu, WR Wong, G Jia, W Sandoval, GW Tew Journal of Lipid Research 64 (6), 2023 | 17 | 2023 |
| Chamaeleo: an integrated evaluation platform for DNA storage Z Ping, H Zhang, S Chen, M NI, X XU, S ZHU, Y SHEN Synthetic Biology Journal 2 (3), 412, 2021 | 14 | 2021 |
| Ancient Admixture into Africa from the ancestors of non-Africans CB Cole, SJ Zhu, I Mathieson, K Prüfer, G Lunter bioRxiv, 2020.06. 01.127555, 2020 | 14 | 2020 |
| Clades and clans: a comparison study of two evolutionary models S Zhu, C Than, T Wu Journal of Mathematical Biology 71 (1), 99-124, 2015 | 11 | 2015 |
| Demographic inference from multiple whole genomes using a particle filter for continuous Markov jump processes D Henderson, S Zhu, CB Cole, G Lunter Plos one 16 (3), e0247647, 2021 | 9 | 2021 |
| Chamaeleo: a robust library for DNA storage coding schemes Z Ping, H Zhang, S Chen, Q Zhuang, SJ Zhu, Y Shen bioRxiv, 2020.01. 02.892588, 2020 | 7 | 2020 |
| Does random tree puzzle produce Yule–Harding trees in the many-taxon limit? S Zhu, M Steel Mathematical Biosciences 243 (1), 109-116, 2013 | 6 | 2013 |
| Chamaeleo: DNA 存储碱基编解码算法的可拓展集成与系统评估平台 平质， 张颢龄， 陈世宏， 倪鸣， 徐讯， 朱砂， 沈玥 合成生物学 2 (3), 412, 2021 | 4 | 2021 |
Zhi PingChinese University of HongKong (Shenzhen); BGI-Research, ShenzhenVerified email at cuhk.edu.cn
