| Global Escherichia coli sequence type 131 clade with blaCTX-M-27 gene Y Matsumura, JDD Pitout, R Gomi, T Matsuda, T Noguchi, M Yamamoto, ... Emerging infectious diseases 22 (11), 1900, 2016 | 206 | 2016 |
| Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen CL Gorrie, M Mirčeta, RR Wick, LM Judd, MMC Lam, R Gomi, IJ Abbott, ... Nature communications 13 (1), 3017, 2022 | 179 | 2022 |
| Rapid identification of different Escherichia coli sequence type 131 clades Y Matsumura, JDD Pitout, G Peirano, R DeVinney, T Noguchi, ... Antimicrobial Agents and Chemotherapy 61 (8), 10.1128/aac. 00179-17, 2017 | 116 | 2017 |
| Whole-genome analysis of antimicrobial-resistant and extraintestinal pathogenic Escherichia coli in river water R Gomi, T Matsuda, Y Matsumura, M Yamamoto, M Tanaka, S Ichiyama, ... Applied and Environmental Microbiology 83 (5), e02703-16, 2017 | 93 | 2017 |
| Characteristics of carbapenemase-producing Enterobacteriaceae in wastewater revealed by genomic analysis R Gomi, T Matsuda, M Yamamoto, PH Chou, M Tanaka, S Ichiyama, ... Antimicrobial agents and chemotherapy 62 (5), 10.1128/aac. 02501-17, 2018 | 82 | 2018 |
| Fecal Source Tracking in Water by Next-Generation Sequencing Technologies Using Host-Specific Escherichia coli Genetic Markers R Gomi, T Matsuda, Y Matsui, M Yoneda Environmental science & technology 48 (16), 9616-9623, 2014 | 77 | 2014 |
| Occurrence of clinically important lineages, including the sequence type 131 C1-M27 subclone, among extended-spectrum-β-lactamase-producing Escherichia coli in wastewater R Gomi, T Matsuda, Y Matsumura, M Yamamoto, M Tanaka, S Ichiyama, ... Antimicrobial agents and chemotherapy 61 (9), 10.1128/aac. 00564-17, 2017 | 60 | 2017 |
| Characterization of Pathogenic Escherichia coli in River Water by Simultaneous Detection and Sequencing of 14 Virulence Genes R Gomi, T Matsuda, Y Fujimori, H Harada, Y Matsui, M Yoneda Environmental Science & Technology 49 (11), 6800-6807, 2015 | 35 | 2015 |
| Assessment of Genetic Markers for Tracking the Sources of Human Wastewater Associated Escherichia coli in Environmental Waters A Warish, C Triplett, R Gomi, P Gyawali, L Hodgers, S Toze Environmental Science & Technology 49 (15), 9341-9346, 2015 | 33 | 2015 |
| Detection of plasmid contigs in draft genome assemblies using customized Kraken databases R Gomi, KL Wyres, KE Holt Microbial genomics 7 (4), 000550, 2021 | 28 | 2021 |
| Genomic surveillance of antimicrobial-resistant Escherichia coli in fecal sludge and sewage in Uganda R Gomi, Y Matsumura, M Yamamoto, M Tanaka, AJ Komakech, ... Water Research 248, 120830, 2024 | 24 | 2024 |
| Chromosomal integration of blaCTX-M genes in diverse Escherichia coli isolates recovered from river water in Japan R Gomi, M Yamamoto, M Tanaka, Y Matsumura Current Research in Microbial Sciences 3, 100144, 2022 | 23 | 2022 |
| Pathotyping of Escherichia coli isolated from community toilet wastewater and stored drinking water in a slum in Bangladesh H Harada, Y Fujimori, R Gomi, MN Ahsan, S Fujii, A Sakai, T Matsuda Letters in Applied Microbiology 66 (6), 542-548, 2018 | 22 | 2018 |
| Interspecies Dissemination of a Mobilizable Plasmid Harboring blaIMP-19 and the Possibility of Horizontal Gene Transfer in a Single Patient M Yamamoto, Y Matsumura, R Gomi, T Matsuda, M Tanaka, M Nagao, ... Antimicrobial Agents and Chemotherapy 60 (9), 5412-5419, 2016 | 20 | 2016 |
| Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. Nat Commun. 2022; 13 (1): 3017 CL Gorrie, M Mirčeta, RR Wick, LM Judd, MMC Lam, R Gomi, IJ Abbott, ... DOI: https://doi. org/10.1038/s41467-022-30717-6, 0 | 15 | |
| Emergence of rare carbapenemases (FRI, GES-5, IMI, SFC and SFH-1) in Enterobacterales isolated from surface waters in Japan R Gomi, Y Matsumura, M Tanaka, M Ihara, Y Sugie, T Matsuda, ... Journal of Antimicrobial Chemotherapy 77 (5), 1237-1246, 2022 | 14 | 2022 |
| Molecular Analysis of a blaIMP-1-Harboring Class 3 Integron in Multidrug-Resistant Pseudomonas fulva M Yamamoto, Y Matsumura, R Gomi, T Matsuda, S Nakano, M Nagao, ... Antimicrobial Agents and Chemotherapy 62 (8), 10.1128/aac. 00701-18, 2018 | 9 | 2018 |
| Development of two microbial source tracking markers for detection of wastewater-associated Escherichia coli isolates R Gomi, E Haramoto, H Wada, Y Sugie, CY Ma, S Raya, B Malla, ... Science of The Total Environment 864, 160952, 2023 | 8 | 2023 |
| Molecular characterization of a multidrug-resistant IncF plasmid carrying mcr-3.1 in an Escherichia coli sequence type 393 strain of wastewater origin. R Gomi, T Matsuda, M Yamamoto, M Tanaka, S Ichiyama, M Yoneda, ... International Journal of Antimicrobial Agents 54 (4), 524-526, 2019 | 7 | 2019 |
| Quinolone Resistance Genes qnr, aac(6′)-Ib-cr, oqxAB, and qepA in Environmental Escherichia coli: Insights into Their Genetic Contexts from Comparative … R Gomi, F Adachi Microbial Ecology 88 (1), 6, 2025 | 6 | 2025 |
