| SITEHOUND-web: a server for ligand binding site identification in protein structures M Hernandez, D Ghersi, R Sanchez Nucleic acids research 37 (suppl_2), W413-W416, 2009 | 264 | 2009 |
| Narrowed TCR repertoire and viral escape as a consequence of heterologous immunity M Cornberg, AT Chen, LA Wilkinson, MA Brehm, SK Kim, C Calcagno, ... The Journal of clinical investigation 116 (5), 1443-1456, 2006 | 192 | 2006 |
| Improving accuracy and efficiency of blind protein‐ligand docking by focusing on predicted binding sites D Ghersi, R Sanchez Proteins: Structure, Function, and Bioinformatics 74 (2), 417-424, 2009 | 172 | 2009 |
| CD8 memory T cells: cross-reactivity and heterologous immunity LK Selin, M Cornberg, MA Brehm, SK Kim, C Calcagno, D Ghersi, ... Seminars in immunology 16 (5), 335-347, 2004 | 157 | 2004 |
| IFN-induced attrition of CD8 T cells in the presence or absence of cognate antigen during the early stages of viral infections K Bahl, SK Kim, C Calcagno, D Ghersi, R Puzone, F Celada, LK Selin, ... The Journal of Immunology 176 (7), 4284-4295, 2006 | 151 | 2006 |
| Cancer-associated fibroblasts: versatile players in the tumor microenvironment D Ganguly, R Chandra, J Karalis, M Teke, T Aguilera, R Maddipati, ... Cancers 12 (9), 2652, 2020 | 127 | 2020 |
| Broad TCR repertoire and diverse structural solutions for recognition of an immunodominant CD8+ T cell epitope IY Song, A Gil, R Mishra, D Ghersi, LK Selin, LJ Stern Nature structural & molecular biology 24 (4), 395-406, 2017 | 123 | 2017 |
| Building towards precision medicine: empowering medical professionals for the next revolution S McGrath, D Ghersi BMC medical genomics 9 (1), 23, 2016 | 122 | 2016 |
| EasyMIFs and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures D Ghersi, R Sanchez Bioinformatics 25 (23), 3185-3186, 2009 | 100 | 2009 |
| Beyond structural genomics: computational approaches for the identification of ligand binding sites in protein structures D Ghersi, R Sanchez Journal of structural and functional genomics 12 (2), 109-117, 2011 | 66 | 2011 |
| MUCIN-4 (MUC4) is a novel tumor antigen in pancreatic cancer immunotherapy SK Gautam, S Kumar, V Dam, D Ghersi, M Jain, SK Batra Seminars in immunology 47, 101391, 2020 | 65 | 2020 |
| Severity of acute infectious mononucleosis correlates with cross-reactive influenza CD8 T-cell receptor repertoires N Aslan, LB Watkin, A Gil, R Mishra, FG Clark, RM Welsh, D Ghersi, ... MBio 8 (6), 10.1128/mbio. 01841-17, 2017 | 54 | 2017 |
| molBLOCKS: decomposing small molecule sets and uncovering enriched fragments D Ghersi, M Singh Bioinformatics 30 (14), 2081-2083, 2014 | 53 | 2014 |
| Genome-wide detection and analysis of multifunctional genes Y Pritykin, D Ghersi, M Singh PLoS computational biology 11 (10), e1004467, 2015 | 49 | 2015 |
| Biochemical profiling of histone binding selectivity of the yeast bromodomain family Q Zhang, S Chakravarty, D Ghersi, L Zeng, AN Plotnikov, R Sanchez, ... PloS one 5 (1), e8903, 2010 | 48 | 2010 |
| Two critical positions in zinc finger domains are heavily mutated in three human cancer types D Munro, D Ghersi, M Singh PLoS computational biology 14 (6), e1006290, 2018 | 45 | 2018 |
| FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis ML Hale, I Thapa, D Ghersi BMC bioinformatics 20 (1), 359, 2019 | 38 | 2019 |
| Interaction-based discovery of functionally important genes in cancers D Ghersi, M Singh Nucleic acids research 42 (3), e18-e18, 2014 | 35 | 2014 |
| Mucin 5AC–Mediated CD44/ITGB1 Clustering Mobilizes Adipose-Derived Mesenchymal Stem Cells to Modulate Pancreatic Cancer Stromal Heterogeneity K Ganguly, JL Cox, D Ghersi, PM Grandgenett, MA Hollingsworth, M Jain, ... Gastroenterology 162 (7), 2032-2046. e12, 2022 | 28 | 2022 |
| CDR3α drives selection of the immunodominant Epstein Barr virus (EBV) BRLF1-specific CD8 T cell receptor repertoire in primary infection L Kamga, A Gil, I Song, R Brody, D Ghersi, N Aslan, LJ Stern, LK Selin, ... PLoS pathogens 15 (11), e1008122, 2019 | 27 | 2019 |
