| NIH Image to ImageJ: 25 years of image analysis CA Schneider, WS Rasband, KW Eliceiri Nature methods 9 (7), 671-675, 2012 | 72287 | 2012 |
| Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012 | 72203 | 2012 |
| ImageJ2: ImageJ for the next generation of scientific image data CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ... BMC bioinformatics 18 (1), 529, 2017 | 6955 | 2017 |
| TrackMate: An open and extensible platform for single-particle tracking JY Tinevez, N Perry, J Schindelin, GM Hoopes, GD Reynolds, ... Methods 115, 80-90, 2017 | 3842 | 2017 |
| The ImageJ ecosystem: An open platform for biomedical image analysis J Schindelin, CT Rueden, MC Hiner, KW Eliceiri Molecular reproduction and development 82 (7-8), 518-529, 2015 | 3137 | 2015 |
| Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017 | 2695 | 2017 |
| Collagen reorganization at the tumor-stromal interface facilitates local invasion PP Provenzano, KW Eliceiri, JM Campbell, DR Inman, JG White, PJ Keely BMC medicine 4 (1), 38, 2006 | 2284 | 2006 |
| Collagen density promotes mammary tumor initiation and progression PP Provenzano, DR Inman, KW Eliceiri, JG Knittel, L Yan, CT Rueden, ... BMC medicine 6 (1), 11, 2008 | 1774 | 2008 |
| Aligned collagen is a prognostic signature for survival in human breast carcinoma MW Conklin, JC Eickhoff, KM Riching, CA Pehlke, KW Eliceiri, ... The American journal of pathology 178 (3), 1221-1232, 2011 | 1593 | 2011 |
| In vivo multiphoton microscopy of NADH and FAD redox states, fluorescence lifetimes, and cellular morphology in precancerous epithelia MC Skala, KM Riching, A Gendron-Fitzpatrick, J Eickhoff, KW Eliceiri, ... Proceedings of the National Academy of Sciences 104 (49), 19494-19499, 2007 | 1272 | 2007 |
| Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011 | 1227 | 2011 |
| Metadata matters: access to image data in the real world M Linkert, CT Rueden, C Allan, JM Burel, W Moore, A Patterson, ... Journal of Cell Biology 189 (5), 777-782, 2010 | 1219 | 2010 |
| Dual-stream multiple instance learning network for whole slide image classification with self-supervised contrastive learning B Li, Y Li, KW Eliceiri Proceedings of the IEEE/CVF conference on computer vision and pattern …, 2021 | 1119 | 2021 |
| Matrix density-induced mechanoregulation of breast cell phenotype, signaling and gene expression through a FAK–ERK linkage PP Provenzano, DR Inman, KW Eliceiri, PJ Keely Oncogene 28 (49), 4326-4343, 2009 | 854 | 2009 |
| Biological imaging software tools KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ... Nature methods 9 (7), 697-710, 2012 | 680 | 2012 |
| Contact guidance mediated three-dimensional cell migration is regulated by Rho/ROCK-dependent matrix reorganization PP Provenzano, DR Inman, KW Eliceiri, SM Trier, PJ Keely Biophysical journal 95 (11), 5374-5384, 2008 | 644 | 2008 |
| 3D collagen alignment limits protrusions to enhance breast cancer cell persistence KM Riching, BL Cox, MR Salick, C Pehlke, AS Riching, SM Ponik, ... Biophysical journal 107 (11), 2546-2558, 2014 | 562 | 2014 |
| Beyond the margins: real-time detection of cancer using targeted fluorophores RR Zhang, AB Schroeder, JJ Grudzinski, EL Rosenthal, JM Warram, ... Nature reviews Clinical oncology 14 (6), 347-364, 2017 | 525 | 2017 |
| Computational segmentation of collagen fibers from second-harmonic generation images of breast cancer JS Bredfeldt, Y Liu, CA Pehlke, MW Conklin, JM Szulczewski, DR Inman, ... Journal of biomedical optics 19 (1), 016007-016007, 2014 | 513 | 2014 |
| Metabolic mapping of MCF10A human breast cells via multiphoton fluorescence lifetime imaging of the coenzyme NADH DK Bird, L Yan, KM Vrotsos, KW Eliceiri, EM Vaughan, PJ Keely, JG White, ... Cancer research 65 (19), 8766-8773, 2005 | 486 | 2005 |
