| Salmon provides fast and bias-aware quantification of transcript expression R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford Nature methods 14 (4), 417-419, 2017 | 12336 | 2017 |
| A fast, lock-free approach for efficient parallel counting of occurrences of k-mers G Marçais, C Kingsford Bioinformatics 27 (6), 764-770, 2011 | 4787 | 2011 |
| What are decision trees? C Kingsford, SL Salzberg Nature biotechnology 26 (9), 1011-1013, 2008 | 1101 | 2008 |
| Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms R Patro, SM Mount, C Kingsford Nature biotechnology 32 (5), 462-464, 2014 | 825 | 2014 |
| Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake CL Kingsford, K Ayanbule, SL Salzberg Genome biology 8 (2), R22, 2007 | 623 | 2007 |
| The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019 | 566 | 2019 |
| The power of protein interaction networks for associating genes with diseases S Navlakha, C Kingsford Bioinformatics 26 (8), 1057-1063, 2010 | 451 | 2010 |
| Genome analysis linking recent European and African influenza (H5N1) viruses SL Salzberg, C Kingsford, G Cattoli, DJ Spiro, DA Janies, MM Aly, ... Emerging infectious diseases 13 (5), 713, 2007 | 278 | 2007 |
| Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9 (1), 14, 2014 | 265 | 2014 |
| Global network alignment using multiscale spectral signatures R Patro, C Kingsford Bioinformatics 28 (23), 3105-3114, 2012 | 258 | 2012 |
| Solving and analyzing side-chain positioning problems using linear and integer programming CL Kingsford, B Chazelle, M Singh Bioinformatics 21 (7), 1028-1039, 2005 | 257 | 2005 |
| Accurate assembly of transcripts through phase-preserving graph decomposition M Shao, C Kingsford Nature biotechnology 35 (12), 1167-1169, 2017 | 246 | 2017 |
| Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21 (1), 239, 2020 | 215 | 2020 |
| Assembly complexity of prokaryotic genomes using short reads C Kingsford, MC Schatz, M Pop BMC bioinformatics 11 (1), 21, 2010 | 211 | 2010 |
| Salmon: accurate, versatile and ultrafast quantification from RNA-seq data using lightweight-alignment R Patro, G Duggal, C Kingsford BioRxiv 10, 021592, 2015 | 199 | 2015 |
| Fast search of thousands of short-read sequencing experiments B Solomon, C Kingsford Nature biotechnology 34 (3), 300-302, 2016 | 180 | 2016 |
| Alignment and clustering of phylogenetic markers-implications for microbial diversity studies JR White, S Navlakha, N Nagarajan, MR Ghodsi, C Kingsford, M Pop BMC bioinformatics 11 (1), 152, 2010 | 118 | 2010 |
| A semidefinite programming approach to side chain positioning with new rounding strategies B Chazelle, C Kingsford, M Singh INFORMS Journal on Computing 16 (4), 380-392, 2004 | 116 | 2004 |
| How much data is sufficient to learn high-performing algorithms? generalization guarantees for data-driven algorithm design MF Balcan, D DeBlasio, T Dick, C Kingsford, T Sandholm, E Vitercik Proceedings of the 53rd Annual ACM SIGACT Symposium on Theory of Computing …, 2021 | 107 | 2021 |
| GiRaF: robust, computational identification of influenza reassortments via graph mining N Nagarajan, C Kingsford Nucleic acids research 39 (6), e34-e34, 2011 | 105 | 2011 |
Geet DuggalPh.D. Student, School of Computer Science, Carnegie Mellon UniversityVerified email at cs.cmu.edu
