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Qifang Xu
Qifang Xu
Fox Chase Cancer Center
Verified email at fccc.edu - Homepage
Title
Cited by
Cited by
Year
PyIgClassify: a database of antibody CDR structural classifications
J Adolf-Bryfogle, Q Xu, B North, A Lehmann, RL Dunbrack Jr
Nucleic acids research 43 (D1), D432-D438, 2015
1642015
Statistical analysis of interface similarity in crystals of homologous proteins
Q Xu, AA Canutescu, G Wang, M Shapovalov, Z Obradovic, ...
Journal of molecular biology 381 (2), 487-507, 2008
1282008
The protein common interface database (ProtCID)—a comprehensive database of interactions of homologous proteins in multiple crystal forms
Q Xu, RL Dunbrack
Nucleic acids research 39 (suppl_1), D761-D770, 2010
952010
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB
Q Xu, RL Dunbrack Jr
Bioinformatics 28 (21), 2763-2772, 2012
792012
ProtCID: a data resource for structural information on protein interactions
Q Xu, RL Dunbrack Jr
Nature communications 11 (1), 711, 2020
582020
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
Genome biology 25 (1), 53, 2024
562024
Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases
Q Xu, KL Malecka, L Fink, EJ Jordan, E Duffy, S Kolander, JR Peterson, ...
Science signaling 8 (405), rs13-rs13, 2015
502015
ProtBuD: a database of biological unit structures of protein families and superfamilies
Q Xu, A Canutescu, Z Obradovic, RL Dunbrack Jr
Bioinformatics 22 (23), 2876-2882, 2006
492006
Assessment of template‐based modeling of protein structure in CASP11
V Modi, Q Xu, S Adhikari, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 84, 200-220, 2016
462016
PP2A/B55α substrate recruitment as defined by the retinoblastoma-related protein p107
H Fowle, Z Zhao, Q Xu, JS Wasserman, X Wang, M Adeyemi, F Feiser, ...
Elife 10, e63181, 2021
422021
BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations
S Deihimi, A Lev, M Slifker, E Shagisultanova, Q Xu, K Jung, ...
Oncotarget 8 (25), 39945, 2017
362017
Principles and characteristics of biological assemblies in experimentally determined protein structures
Q Xu, RL Dunbrack Jr
Current opinion in structural biology 55, 34-49, 2019
302019
Prediction of phenotypes of missense mutations in human proteins from biological assemblies
Q Wei, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 81 (2), 199-213, 2013
292013
An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases
B Weitzner, T Meehan, Q Xu, RL Dunbrack Jr
Proteins: Structure, Function, and Bioinformatics 75 (2), 289-295, 2009
282009
Discriminating physiological from non‐physiological interfaces in structures of protein complexes: a community‐wide study
H Schweke, Q Xu, G Tauriello, L Pantolini, T Schwede, F Cazals, ...
Proteomics 23 (17), 2200323, 2023
212023
Assessment of predicted enzymatic activity of α‐N‐acetylglucosaminidase variants of unknown significance for CAGI 2016
WT Clark, L Kasak, C Bakolitsa, Z Hu, G Andreoletti, G Babbi, Y Bromberg, ...
Human mutation 40 (9), 1519-1529, 2019
212019
BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo-and heterooligomers
MV Shapovalov, Q Wang, Q Xu, M Andrake, RL Dunbrack Jr
PloS one 9 (6), e98309, 2014
212014
Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency
F Kueppers, MD Andrake, Q Xu, RL Dunbrack Jr, J Kim, CL Sanders
BMC Medical Genetics 20 (1), 125, 2019
192019
Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4
Q Xu, Q Tang, P Katsonis, O Lichtarge, D Jones, S Bovo, G Babbi, ...
Human Mutation 38 (9), 1123-1131, 2017
182017
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI
M Carraro, G Minervini, M Giollo, Y Bromberg, E Capriotti, R Casadio, ...
Human mutation 38 (9), 1042-1050, 2017
172017
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