| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 18922 | 2012 |
| Landscape of transcription in human cells S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ... Nature 489 (7414), 101-108, 2012 | 6129 | 2012 |
| The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 5837 | 2012 |
| GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012 | 5700 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 2183 | 2014 |
| Paired-end mapping reveals extensive structural variation in the human genome JO Korbel, AE Urban, JP Affourtit, B Godwin, F Grubert, JF Simons, ... Science 318 (5849), 420-426, 2007 | 1598 | 2007 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS biology 9 (4), e1001046, 2011 | 1551 | 2011 |
| Molecular evolution of a microRNA cluster A Tanzer, PF Stadler Journal of molecular biology 339 (2), 327-335, 2004 | 873 | 2004 |
| The GENCODE pseudogene resource B Pei, C Sisu, A Frankish, C Howald, L Habegger, XJ Mu, R Harte, ... Genome biology 13 (9), R51, 2012 | 410 | 2012 |
| The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7 (1), 25, 2006 | 391 | 2006 |
| Comparative analysis of the transcriptome across distant species MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ... Nature 512 (7515), 445-448, 2014 | 348 | 2014 |
| A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ... Genome biology 15 (2), R34, 2014 | 323 | 2014 |
| Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library HYK Lam, XJ Mu, AM Stütz, A Tanzer, PD Cayting, M Snyder, PM Kim, ... Nature biotechnology 28 (1), 47-55, 2010 | 280 | 2010 |
| Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007 | 228 | 2007 |
| Evolution of microRNAs located within Hox gene clusters A Tanzer, CT Amemiya, CB Kim, PF Stadler Journal of Experimental Zoology Part B: Molecular and Developmental …, 2005 | 199 | 2005 |
| Predicting RNA secondary structures from sequence and probing data R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker Methods 103, 86-98, 2016 | 148 | 2016 |
| Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals VJ Lynch, A Tanzer, Y Wang, FC Leung, B Gellersen, D Emera, ... Proceedings of the National Academy of Sciences 105 (39), 14928-14933, 2008 | 124 | 2008 |
| AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements J Fallmann, V Sedlyarov, A Tanzer, P Kovarik, IL Hofacker Nucleic acids research 44 (D1), D90-D95, 2016 | 115 | 2016 |
| Folding kinetics of large RNAs M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ... Journal of molecular biology 379 (1), 160-173, 2008 | 109 | 2008 |
| Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution V Sedlyarov, J Fallmann, F Ebner, J Huemer, L Sneezum, M Ivin, ... Molecular systems biology 12 (5), 868, 2016 | 103 | 2016 |
