| Proteingym: Large-scale benchmarks for protein fitness prediction and design P Notin, A Kollasch, D Ritter, L Van Niekerk, S Paul, H Spinner, N Rollins, ... Advances in Neural Information Processing Systems 36, 64331-64379, 2023 | 358 | 2023 |
| Machine learning for functional protein design P Notin, N Rollins, Y Gal, C Sander, D Marks Nature Biotechnology 42 (2), 216-228, 2024 | 255 | 2024 |
| Learning from prepandemic data to forecast viral escape NN Thadani, S Gurev, P Notin, N Youssef, NJ Rollins, D Ritter, C Sander, ... Nature, 1-8, 2023 | 202 | 2023 |
| Inferring protein 3D structure from deep mutation scans NJ Rollins, KP Brock, FJ Poelwijk, MA Stiffler, NP Gauthier, C Sander, ... Nature genetics 51 (7), 1170-1176, 2019 | 193 | 2019 |
| Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact MA Chiasson, NJ Rollins, JJ Stephany, KA Sitko, KA Matreyek, M Verby, ... elife 9, e58026, 2020 | 91 | 2020 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 58 | 2022 |
| MaveDB 2024: a curated community database with over seven million variant effects from multiplexed functional assays AF Rubin, J Stone, AH Bianchi, BJ Capodanno, EY Da, M Dias, ... Genome biology 26 (1), 13, 2025 | 43 | 2025 |
| Exploring targeting peptide-shell interactions in encapsulin nanocompartments WJ Altenburg, N Rollins, PA Silver, TW Giessen Scientific reports 11 (1), 4951, 2021 | 43 | 2021 |
| Chimeric fatty acyl-acyl carrier protein thioesterases provide mechanistic insight into enzyme specificity and expression M Ziesack, N Rollins, A Shah, B Dusel, G Webster, PA Silver, JC Way Applied and environmental microbiology 84 (10), e02868-17, 2018 | 37 | 2018 |
| Protein design using structure-based residue preferences D Ding, AY Shaw, S Sinai, N Rollins, N Prywes, DF Savage, MT Laub, ... Nature Communications 15 (1), 1639, 2024 | 36 | 2024 |
| Natural and designed proteins inspired by extremotolerant organisms can form condensates and attenuate apoptosis in human cells MT Veling, DT Nguyen, NN Thadani, ME Oster, NJ Rollins, KP Brock, ... ACS synthetic biology 11 (3), 1292-1302, 2022 | 24 | 2022 |
| MaveDB v2: a curated community database with over three million variant effects from multiplexed functional assays A Rubin, J Min, N Rollins, E Da, D Esposito, M Harrington, J Stone, ... bioRxiv, 2021 | 21 | 2021 |
| Zero-shot antibody design in a 24-well plate CD Team, J Boitreaud, J Dent, D Geisz, M McPartlon, J Meier, Z Qiao, ... bioRxiv, 2025-07, 2025 | 16 | 2025 |
| Results of the protein engineering tournament: an open science benchmark for protein modeling and design C Armer, H Kane, DL Cortade, H Redestig, DA Estell, A Yusuf, N Rollins, ... Proteins: Structure, Function, and Bioinformatics 93 (11), 2005-2014, 2025 | 13 | 2025 |
| Zero-shot antibody design in a 24-well plate C Discovery, J Boitreaud, J Dent, D Geisz, M McPartlon, J Meier, Z Qiao, ... bioRxiv, 2025 | 11* | 2025 |
| Removing bias in sequence models of protein fitness A Shaw, H Spinner, S Gurev, JE Shin, N Rollins, D Marks bioRxiv, 2023 | 11 | 2023 |
| Proteingym: Large-scale benchmarks for protein design and fitness prediction. bioRxiv P Notin, AW Kollasch, D Ritter, L van Niekerk, S Paul, H Spinner, ... December, 2023 | 9 | 2023 |
| Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact. Elife [Internet]. 2020; 9 MA Chiasson, NJ Rollins, JJ Stephany, KA Sitko, KA Matreyek, M Verby Article CAS PubMed PubMed Central, 0 | 9 | |
| 3D protein structure from genetic epistasis experiments NJ Rollins, KP Brock, FJ Poelwijk, MA Stiffler, NP Gauthier, C Sander, ... bioRxiv, 320721, 2018 | 8 | 2018 |
| High-Content Screening and Computational Prediction Reveal Viral Genes That Suppress the Innate Immune Response TL Ng, EJ Olson, TY Yoo, HS Weiss, Y Koide, PD Koch, NJ Rollins, ... Msystems 7 (2), e01466-21, 2022 | 6 | 2022 |
