| A comparison of tools for the simulation of genomic next-generation sequencing data M Escalona, S Rocha, D Posada Nature Reviews Genetics 17 (8), 459-469, 2016 | 245 | 2016 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 203 | 2022 |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility WC Warren, RA Harris, M Haukness, IT Fiddes, SC Murali, J Fernandes, ... Science 370 (6523), eabc6617, 2020 | 167 | 2020 |
| Landscape genomics to enable conservation actions: the California Conservation Genomics Project HB Shaffer, E Toffelmier, RB Corbett-Detig, M Escalona, B Erickson, ... Journal of Heredity 113 (6), 577-588, 2022 | 156 | 2022 |
| Automatic recognition and scoring of olympic rhythmic gymnastic movements MP Díaz-Pereira, I Gomez-Conde, M Escalona, DN Olivieri Human movement science 34, 63-80, 2014 | 60 | 2014 |
| Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery PM Benham, C Cicero, M Escalona, E Beraut, C Fairbairn, ... Genome Biology and Evolution 16 (4), evae067, 2024 | 26 | 2024 |
| Limited genomic signatures of population collapse in the critically endangered black abalone (Haliotis cracherodii) B Wooldridge, C Orland, E Enbody, M Escalona, C Mirchandani, ... Molecular Ecology 34 (23), e17362, 2025 | 23 | 2025 |
| A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics JS Griffiths, RM Sahasrabudhe, M Marimuthu, N Chumchim, OH Nguyen, ... Journal of Heredity 113 (6), 673-680, 2022 | 22 | 2022 |
| Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer LX Paggeot, MB DeBiasse, M Escalona, C Fairbairn, M Marimuthu, ... Journal of Heredity 113 (6), 681-688, 2022 | 21 | 2022 |
| Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial CJ Hogg, RJ Edwards, KA Farquharson, LW Silver, P Brandies, E Peel, ... Nature ecology & evolution 8 (7), 1311-1326, 2024 | 17 | 2024 |
| Reference Genome of the Northwestern Pond Turtle, Actinemys marmorata BD Todd, TS Jenkinson, M Escalona, E Beraut, O Nguyen, ... Journal of Heredity 113 (6), 624-631, 2022 | 17 | 2022 |
| Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca) Y Huang, M Escalona, G Morrison, MPA Marimuthu, O Nguyen, ... Journal of Heredity 113 (2), 188-196, 2022 | 15 | 2022 |
| Reference genome for the American rubyspot damselfly, Hetaerina americana GF Grether, J Beninde, E Beraut, N Chumchim, M Escalona, ... Journal of Heredity 114 (4), 385-394, 2023 | 13 | 2023 |
| De novo assembly of a chromosome-level reference genome for the California Scrub-Jay, Aphelocoma californica DA DeRaad, M Escalona, PM Benham, MPA Marimuthu, ... Journal of Heredity 114 (6), 669-680, 2023 | 12 | 2023 |
| Reference genome of California walnut, Juglans californica, and resemblance with other genomes in the order Fagales S Fitz-Gibbon, A Mead, S O’Donnell, ZZ Li, M Escalona, E Beraut, ... Journal of Heredity 114 (5), 570-579, 2023 | 12 | 2023 |
| A Draft Reference Genome Assembly of the Critically Endangered Black Abalone, Haliotis cracherodii C Orland, M Escalona, R Sahasrabudhe, MPA Marimuthu, O Nguyen, ... Journal of Heredity 113 (6), 665-672, 2022 | 12 | 2022 |
| A reference genome assembly of the bobcat, Lynx rufus M Lin, M Escalona, R Sahasrabudhe, O Nguyen, E Beraut, MR Buchalski, ... Journal of Heredity 113 (6), 615-623, 2022 | 11 | 2022 |
| Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis AP Bishop, EP Westeen, ML Yuan, M Escalona, E Beraut, C Fairbairn, ... Journal of Heredity 114 (5), 521-528, 2023 | 10 | 2023 |
| A highly contiguous genome assembly for the California quail (Callipepla californica) PM Benham, C Cicero, M Escalona, E Beraut, MPA Marimuthu, O Nguyen, ... Journal of Heredity 114 (4), 418-427, 2023 | 9 | 2023 |
| Reference genome of the rubber boa, Charina bottae (Serpentes: Boidae) JL Grismer, M Escalona, C Miller, E Beraut, CW Fairbairn, M Marimuthu, ... Journal of Heredity 113 (6), 641-648, 2022 | 9 | 2022 |