| ImageJ2: ImageJ for the next generation of scientific image data CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ... BMC bioinformatics 18 (1), 529, 2017 | 6955 | 2017 |
| The ImageJ ecosystem: An open platform for biomedical image analysis J Schindelin, CT Rueden, MC Hiner, KW Eliceiri Molecular reproduction and development 82 (7-8), 518-529, 2015 | 3137 | 2015 |
| Quantitating the cell: turning images into numbers with ImageJ ET Arena, CT Rueden, MC Hiner, S Wang, M Yuan, KW Eliceiri Wiley Interdisciplinary Reviews: Developmental Biology 6 (2), e260, 2017 | 188 | 2017 |
| FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis D Gao, PR Barber, JV Chacko, MA Kader Sagar, CT Rueden, AR Grislis, ... PloS one 15 (12), e0238327, 2020 | 54 | 2020 |
| PyImageJ: A library for integrating ImageJ and Python CT Rueden, MC Hiner, EL Evans III, MA Pinkert, AM Lucas, AE Carpenter, ... Nature methods 19 (11), 1326-1327, 2022 | 53 | 2022 |
| ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability MC Hiner, CT Rueden, KW Eliceiri Bioinformatics 33 (4), 629-630, 2017 | 33 | 2017 |
| SCIFIO: an extensible framework to support scientific image formats MC Hiner, CT Rueden, KW Eliceiri BMC bioinformatics 17 (1), 521, 2016 | 31 | 2016 |
| ImageJ Plugin CorrectBleach V2. 0.2 K Miura, C Rueden, M Hiner, J Schindelin, J Rietdorf V2. 0.2 ed, 2014 | 29 | 2014 |
| thorstenwagner/ij-ridgedetection: Ridge Detection 1.4. 0 T Wagner, M Hiner Zenodo, 2017 | 23 | 2017 |
| ImageJ: image analysis interoperability for the next generation of biological image data CT Rueden, MC Hiner, KW Eliceiri Microscopy and Microanalysis 22 (S3), 2066-2067, 2016 | 21 | 2016 |
| Cellprofiler Plugins–an easy image analysis platform integration for containers and python tools E Weisbart, C Tromans‐Coia, B Diaz‐Rohrer, DR Stirling, F Garcia‐Fossa, ... Journal of microscopy 296 (3), 227-234, 2024 | 16 | 2024 |
| tferr/Scripts: BAR 1.5. 1 T Ferreira, M Hiner, C Rueden, K Miura, J Eglinger, B Chef Zenodo, 2017 | 13 | 2017 |
| napari-imagej: ImageJ ecosystem access from napari GJ Selzer, CT Rueden, MC Hiner, EL Evans III, KIS Harrington, ... Nature methods 20 (10), 1443-1444, 2023 | 12 | 2023 |
| New extensibility and scripting Tools in the ImageJ ecosystem NA Gahm, CT Rueden, EL Evans III, G Selzer, MC Hiner, JV Chacko, ... Current protocols 1 (8), e204, 2021 | 10 | 2021 |
| fiji/Trainable_Segmentation: Trainable_Segmentation-3.2. 27 I Arganda-Carreras, C Rueden, J Schindelin, M Ezzat, M Arzt, M Hiner, ... Zenodo, 2022 | 4 | 2022 |
| CellProfiler plugins--an easy image analysis platform integration for containers and Python tools C Tromans-Coia, B Diaz-Rohrer, E Weisbart, DR Stirling, F Garcia-Fossa, ... arXiv e-prints, arXiv: 2306.01915, 2023 | 3 | 2023 |
| Differentiating gene expression profiles of staphylococcal enterotoxin B and lipopolysaccharide in induced human PBMCs M Linebach, M Murphy, M Hiner, R Staab J Res Development 2 (2), 2014 | 3 | 2014 |
| CorrectBleach: upgrade with Exponential fitting method J Schindelin, C Rueden, K Miura, M Hiner, JY Tinevez Zenodo, 2016 | 2 | 2016 |
| SciJava Ops: an improved algorithms framework for Fiji and beyond T Boudier, G Gut, V Meas-Yedid, J Nunez-Iglesias, KW Eliceiri, GJ Selzer, ... | 1 | 2024 |
| Open Source BioImage Informatics: Tools for Interoperability CT Rueden, J Schindelin, BE Dezonia, AR Grislis, MC Hiner, KW Eliceiri Microscopy and Microanalysis 19 (S2), 754-755, 2013 | 1 | 2013 |
