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Johanna K. S. Tiemann
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Year
Bringing Molecular Dynamics Simulation Data into View
PW Hildebrand, AS Rose, JKS Tiemann
Trends in biochemical sciences, 2019
2972019
Structural insights into the process of GPCR-G protein complex formation
X Liu, X Xu, D Hilger, P Aschauer, JKS Tiemann, Y Du, H Liu, K Hirata, ...
Cell 177 (5), 1243-1251. e12, 2019
1952019
GPCRmd uncovers the dynamics of the 3D-GPCRome
I Rodríguez-Espigares, M Torrens-Fontanals, JKS Tiemann, ...
Nature Methods 17 (8), 777-787, 2020
1912020
GPCR-SSFE 2.0—a fragment-based molecular modeling web tool for Class A G-protein coupled receptors
CL Worth, F Kreuchwig, JKS Tiemann, A Kreuchwig, M Ritschel, ...
Nucleic acids research 45 (W1), W408-W415, 2017
442017
Sharing Data from Molecular Simulations
M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ...
Journal of chemical information and modeling 59 (10), 4093-4099, 2019
422019
MDsrv: viewing and sharing molecular dynamics simulations on the web
JKS Tiemann, R Guixà-González, PW Hildebrand, AS Rose
Nature Methods 14 (12), 1123, 2017
422017
SL2: an interactive webtool for modeling of missing segments in proteins
J Ismer, AS Rose, JKS Tiemann, A Goede, R Preissner, PW Hildebrand
Nucleic acids research 44 (W1), W390-W394, 2016
362016
MDverse, shedding light on the dark matter of molecular dynamics simulations
JKS Tiemann, M Szczuka, L Bouarroudj, M Oussaren, S Garcia, ...
Elife 12, RP90061, 2024
352024
Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways
D Aranda-García, TM Stepniewski, M Torrens-Fontanals, A García-Recio, ...
Nature communications 16 (1), 2020, 2025
342025
HomolWat: a web server tool to incorporate ‘homologous’ water molecules into GPCR structures
E Mayol, A García-Recio, JKS Tiemann, PW Hildebrand, ...
Nucleic acids research 48 (W1), W54-W59, 2020
322020
MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts
M Philipp, CW Moth, N Ristic, JKS Tiemann, F Seufert, A Panfilova, ...
Nucleic Acids Research 52 (W1), W132-W139, 2024
262024
Interpreting the molecular mechanisms of disease variants in human transmembrane proteins
JKS Tiemann, H Zschach, K Lindorff-Larsen, A Stein
Biophysical Journal 122 (11), 2176-2191, 2023
242023
The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling
ME Sommer, J Selent, J Carlsson, C De Graaf, DE Gloriam, GM Keseru, ...
ACS Pharmacology & Translational Science, 2020
232020
Mechanistic insights into G-protein coupling with an agonist-bound G-protein-coupled receptor
H Batebi, G Pérez-Hernández, SN Rahman, B Lan, A Kamprad, M Shi, ...
Nature structural & molecular biology 31 (11), 1692-1701, 2024
202024
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
J Koehler Leman, S Lyskov, SM Lewis, J Adolf-Bryfogle, RF Alford, ...
Nature communications 12 (1), 6947, 2021
202021
MDsrv: visual sharing and analysis of molecular dynamics simulations
M Kampfrath, R Staritzbichler, GP Hernández, AS Rose, JKS Tiemann, ...
Nucleic Acids Research 50 (W1), W483-W489, 2022
132022
Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes
J Ismer, AS Rose, JKS Tiemann, A Goede, K Rother, PW Hildebrand
Nucleic acids research 41 (D1), D280-D284, 2012
62012
A fragment based method for modeling of protein segments into cryo-EM density maps
J Ismer, AS Rose, JKS Tiemann, PW Hildebrand
BMC Bioinformatics 18 (1), 475, 2017
22017
FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps
JKS Tiemann, AS Rose, J Ismer, MD Darvish, T Hilal, CMT Spahn, ...
Nucleic Acids Research, 2018
12018
Mechanistic insights into G protein association with a G protein-coupled receptor
H Batebi, G Pérez-Hernández, J Mathiesen, M Shi, JKS Tiemann, ...
2023
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Articles 1–20