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Robert Hubley
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Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
32635*2001
RepeatMasker
AFA Smit, R Hubley, P Green
Published on the web at http://www. repeatmasker. org, 1996
4818*1996
RepeatModeler2: automated genomic discovery of transposable element families
JM Flynn, R Hubley, C Goubert, J Rosen, AG Clark, C Feschotte, ...
BioRxiv, 856591, 2019
34492019
Analysis of genetic inheritance in a family quartet by whole-genome sequencing
JC Roach, G Glusman, AFA Smit, CD Huff, R Hubley, PT Shannon, ...
Science 328 (5978), 636-639, 2010
13732010
The UCSC Genome Browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
11262015
The genome of a songbird
WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Künstner, ...
Nature 464 (7289), 757-762, 2010
10082010
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
10052004
RepeatModeler Open-1.0
AFA Smit, R Hubley
Repeat Masker Website, 2010
834*2010
The Dfam database of repetitive DNA families
R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ...
Nucleic acids research 44 (D1), D81-D89, 2016
8152016
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529, 2011
7632011
The Dfam community resource of transposable element families, sequence models, and genome annotations
J Storer, R Hubley, J Rosen, TJ Wheeler, AF Smit
Mobile DNA 12, 1-14, 2021
6782021
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), research0046. 1, 2002
6042002
Gibbon genome and the fast karyotype evolution of small apes
L Carbone, RA Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ...
Nature 513 (7517), 195, 2014
4232014
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 1254449, 2014
4112014
Dfam: a database of repetitive DNA based on profile hidden Markov models
TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ...
Nucleic acids research 41 (D1), D70-D82, 2013
3482013
The common marmoset genome provides insight into primate biology and evolution
TMG Sequencing, KC Worley, WC Warren, J Rogers, D Locke, DM Muzny, ...
Nature genetics 46 (8), 850, 2014
2372014
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
K Han, MK Konkel, J Xing, H Wang, J Lee, TJ Meyer, CT Huang, ...
science 316 (5822), 238-240, 2007
1232007
A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data
H Hu, JC Roach, H Coon, SL Guthery, KV Voelkerding, RL Margraf, ...
Nature Biotechnology, 2014
1212014
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 2015
1092015
Relationship Estimation from Whole-Genome Sequence Data
H Li, G Glusman, H Hu, J Caballero, R Hubley, D Witherspoon, ...
PLoS Genetics 10 (1), e1004144, 2014
1022014
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Articles 1–20