| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 934 | 2020 |
| Computational enzyme design G Kiss, N Çelebi‐Ölçüm, R Moretti, D Baker, KN Houk Angewandte Chemie International Edition 52 (22), 5700-5725, 2013 | 604 | 2013 |
| Engineering an allosteric transcription factor to respond to new ligands ND Taylor, AS Garruss, R Moretti, S Chan, MA Arbing, D Cascio, ... Nature methods 13 (2), 177-183, 2016 | 379 | 2016 |
| A Pareto-optimal refinement method for protein design scaffolds LG Nivón, R Moretti, D Baker PloS one 8 (4), e59004, 2013 | 365 | 2013 |
| Protocols for molecular modeling with Rosetta3 and RosettaScripts BJ Bender, A Cisneros III, AM Duran, JA Finn, D Fu, AD Lokits, BK Mueller, ... Biochemistry 55 (34), 4748-4763, 2016 | 245 | 2016 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 115 | 2013 |
| Scoring functions for protein–protein interactions IH Moal, R Moretti, D Baker, J Fernández-Recio Current opinion in structural biology 23 (6), 862-867, 2013 | 103 | 2013 |
| A comparison of sugar indicators enables a universal high-throughput sugar-1-phosphate nucleotidyltransferase assay R Moretti, JS Thorson Analytical Biochemistry 377 (2), 251-258, 2008 | 90 | 2008 |
| Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1 VK Mulligan, S Workman, T Sun, S Rettie, X Li, LJ Worrall, TW Craven, ... Proceedings of the National Academy of Sciences 118 (12), e2012800118, 2021 | 71 | 2021 |
| Web‐accessible molecular modeling with Rosetta: the Rosetta online server that includes everyone (ROSIE) R Moretti, S Lyskov, R Das, J Meiler, JJ Gray Protein Science 27 (1), 259-268, 2018 | 71 | 2018 |
| Modeling immunity with Rosetta: methods for antibody and antigen design CT Schoeder, S Schmitz, J Adolf-Bryfogle, AM Sevy, JA Finn, MF Sauer, ... Biochemistry 60 (11), 825-846, 2021 | 63 | 2021 |
| Targeted chemical wedges reveal the role of allosteric DNA modulation in protein− DNA assembly R Moretti, LJ Donato, ML Brezinski, RL Stafford, H Hoff, JS Thorson, ... ACS chemical biology 3 (4), 220-229, 2008 | 56 | 2008 |
| Mono (2‐ethylhexyl) phthalate (MEHP) and mono (2‐ethyl‐5‐oxohexyl) phthalate (MEOHP) but not di (2‐ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator … I Kratochvil, T Hofmann, S Rother, R Schlichting, R Moretti, ... Rapid Communications in Mass Spectrometry 33, 75-85, 2019 | 55 | 2019 |
| Better together: Elements of successful scientific software development in a distributed collaborative community J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ... PLoS computational biology 16 (5), e1007507, 2020 | 54 | 2020 |
| Rosetta and the design of ligand binding sites R Moretti, BJ Bender, B Allison, J Meiler Computational Design of Ligand Binding Proteins, 47-62, 2016 | 51 | 2016 |
| Recent advances in automated structure-based de novo drug design Y Tang, R Moretti, J Meiler Journal of Chemical Information and Modeling 64 (6), 1794-1805, 2024 | 50 | 2024 |
| Expanding the nucleotide and sugar 1-phosphate promiscuity of nucleotidyltransferase RmlA via directed evolution R Moretti, A Chang, P Peltier-Pain, CA Bingman, GN Phillips, JS Thorson Journal of Biological Chemistry 286 (15), 13235-13243, 2011 | 50 | 2011 |
| Interpretable chirality-aware graph neural network for quantitative structure activity relationship modeling in drug discovery YL Liu, Y Wang, O Vu, R Moretti, B Bodenheimer, J Meiler, T Derr Proceedings of the AAAI conference on artificial intelligence 37 (12), 14356 …, 2023 | 48 | 2023 |
| Enhancing the latent nucleotide triphosphate flexibility of the glucose-1-phosphate thymidylyltransferase RmlA R Moretti, JS Thorson Journal of Biological Chemistry 282 (23), 16942-16947, 2007 | 48 | 2007 |
| Identification of a ubiquitin-binding interface using Rosetta and DEER MH Tessmer, DM Anderson, AM Pickrum, MO Riegert, R Moretti, J Meiler, ... Proceedings of the National Academy of Sciences 115 (3), 525-530, 2018 | 37 | 2018 |
