| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005 | 4117 | 2005 |
| Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis EA Susaki, K Tainaka, D Perrin, F Kishino, T Tawara, TM Watanabe, ... Cell 157 (3), 726-739, 2014 | 1493 | 2014 |
| A transcription factor response element for gene expression during circadian night HR Ueda, W Chen, A Adachi, H Wakamatsu, S Hayashi, T Takasugi, ... Nature 418 (6897), 534-539, 2002 | 1102 | 2002 |
| System-level identification of transcriptional circuits underlying mammalian circadian clocks HR Ueda, S Hayashi, W Chen, M Sano, M Machida, Y Shigeyoshi, M Iino, ... Nature genetics 37 (2), 187-192, 2005 | 1012 | 2005 |
| Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging EA Susaki, K Tainaka, D Perrin, H Yukinaga, A Kuno, HR Ueda Nature protocols 10 (11), 1709-1727, 2015 | 890 | 2015 |
| Tissue clearing and its applications in neuroscience HR Ueda, A Ertürk, K Chung, V Gradinaru, A Chédotal, P Tomancak, ... Nature Reviews Neuroscience 21 (2), 61-79, 2020 | 681 | 2020 |
| Maintenance of self‐renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b A Tsumura, T Hayakawa, Y Kumaki, S Takebayashi, M Sakaue, ... Genes to Cells 11 (7), 805-814, 2006 | 670 | 2006 |
| Whole-body imaging with single-cell resolution by tissue decolorization K Tainaka, SI Kubota, TQ Suyama, EA Susaki, D Perrin, ... Cell 159 (4), 911-924, 2014 | 627 | 2014 |
| Thyrotrophin in the pars tuberalis triggers photoperiodic response N Nakao, H Ono, T Yamamura, T Anraku, T Takagi, K Higashi, S Yasuo, ... Nature 452 (7185), 317-322, 2008 | 609 | 2008 |
| Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity Y Sasagawa, I Nikaido, T Hayashi, H Danno, KD Uno, T Imai, HR Ueda Genome biology 14 (4), 1-17, 2013 | 551 | 2013 |
| An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis K Kurimoto, Y Yabuta, Y Ohinata, Y Ono, KD Uno, RG Yamada, HR Ueda, ... Nucleic acids research 34 (5), e42-e42, 2006 | 518 | 2006 |
| Feedback repression is required for mammalian circadian clock function TK Sato, RG Yamada, H Ukai, JE Baggs, LJ Miraglia, TJ Kobayashi, ... Nature genetics 38 (3), 312-319, 2006 | 515 | 2006 |
| Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents K Tainaka, TC Murakami, EA Susaki, C Shimizu, R Saito, K Takahashi, ... Cell reports 24 (8), 2196-2210. e9, 2018 | 376 | 2018 |
| Whole-body and whole-organ clearing and imaging techniques with single-cell resolution: toward organism-level systems biology in mammals EA Susaki, HR Ueda Cell chemical biology 23 (1), 137-157, 2016 | 360 | 2016 |
| A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing TC Murakami, T Mano, S Saikawa, SA Horiguchi, D Shigeta, K Baba, ... Nature neuroscience 21 (4), 625-637, 2018 | 349 | 2018 |
| Chemical principles in tissue clearing and staining protocols for whole-body cell profiling K Tainaka, A Kuno, SI Kubota, T Murakami, HR Ueda Annual review of cell and developmental biology 32, 713-741, 2016 | 341 | 2016 |
| Genome-wide Transcriptional Orchestration of Circadian Rhythms inDrosophila* 210 HR Ueda, A Matsumoto, M Kawamura, M Iino, T Tanimura, S Hashimoto Journal of biological chemistry 277 (16), 14048-14052, 2002 | 332 | 2002 |
| SMILES Transformer: Pre-trained molecular fingerprint for low data drug discovery S Honda, S Shi, HR Ueda arXiv preprint arXiv:1911.04738, 2019 | 329 | 2019 |
| Delay in feedback repression by cryptochrome 1 is required for circadian clock function M Ukai-Tadenuma, RG Yamada, H Xu, JA Ripperger, AC Liu, HR Ueda Cell 144 (2), 268-281, 2011 | 325 | 2011 |
| CKIε/δ-dependent phosphorylation is a temperature-insensitive, period-determining process in the mammalian circadian clock Y Isojima, M Nakajima, H Ukai, H Fujishima, RG Yamada, K Masumoto, ... Proceedings of the National Academy of Sciences 106 (37), 15744-15749, 2009 | 322 | 2009 |
Etsuo A SusakiDepartment of Biochemistry and Systems Biomedicine, Juntendo University Graduate School of MedicineVerified email at juntendo.ac.jp
