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Andrej Savol
Andrej Savol
Foundation Medicine, Inc.
Verified email at foundationmedicine.com
Title
Cited by
Cited by
Year
Macrophages facilitate electrical conduction in the heart
M Hulsmans, S Clauss, L Xiao, AD Aguirre, KR King, A Hanley, ...
Cell 169 (3), 510-522. e20, 2017
10932017
IRF3 and type I interferons fuel a fatal response to myocardial infarction
KR King, AD Aguirre, YX Ye, Y Sun, JD Roh, RP Ng Jr, RH Kohler, ...
Nature medicine 23 (12), 1481-1487, 2017
5872017
Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells
J Choi, AJ Huebner, K Clement, RM Walsh, A Savol, K Lin, H Gu, ...
Nature 548 (7666), 219-223, 2017
3142017
Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning
MS Lau, MG Schwartz, S Kundu, AJ Savol, PI Wang, SK Marr, DJ Grau, ...
Science 355 (6329), 1081-1084, 2017
1682017
Protein conformational populations and functionally relevant substates
A Ramanathan, A Savol, V Burger, CS Chennubhotla, PK Agarwal
Accounts of chemical research 47 (1), 149-156, 2014
1342014
DUSP9 modulates DNA hypomethylation in female mouse pluripotent stem cells
J Choi, K Clement, AJ Huebner, J Webster, CM Rose, J Brumbaugh, ...
Cell stem cell 20 (5), 706-719. e7, 2017
932017
Discovering conformational sub-states relevant to protein function
A Ramanathan, A Savol, P Agarwal, CS Chennubhotla
Biophysical Journal 100 (3), 172a, 2011
912011
Survival in quiescence requires the euchromatic deployment of Clr4/SUV39H by Argonaute-associated small RNAs
RI Joh, JS Khanduja, IA Calvo, M Mistry, CM Palmieri, AJ Savol, SJH Sui, ...
Molecular cell 64 (6), 1088-1101, 2016
522016
Modeling boundary conditions for balanced proliferation in metastatic latency
DP Taylor, JZ Wells, A Savol, C Chennubhotla, A Wells
Clinical Cancer Research 19 (5), 1063-1070, 2013
402013
Event detection and sub‐state discovery from biomolecular simulations using higher‐order statistics: Application to enzyme adenylate kinase
A Ramanathan, AJ Savol, PK Agarwal, CS Chennubhotla
Proteins: Structure, Function, and Bioinformatics 80 (11), 2536-2551, 2012
372012
QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin
AJ Savol, VM Burger, PK Agarwal, A Ramanathan, CS Chennubhotla
Bioinformatics 27 (13), i52-i60, 2011
242011
Astrocytes in the optic nerve are heterogeneous in their reactivity to glaucomatous injury
Y Zhu, R Wang, AC Pappas, P Seifert, A Savol, RI Sadreyev, D Sun, ...
Cells 12 (17), 2131, 2023
142023
Quasi-anharmonic analysis reveals intermediate states in the nuclear co-activator receptor binding domain ensemble
VM Burger, A Ramanathan, AJ Savol, CB Stanley, PK Agarwal, ...
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 70, 2012
142012
Genome-wide identification of autosomal genes with allelic imbalance of chromatin state
AJ Savol, PI Wang, Y Jeon, D Colognori, E Yildirim, SF Pinter, B Payer, ...
PloS one 12 (8), e0182568, 2017
102017
Quantifying the sources of kinetic frustration in folding simulations of small proteins
AJ Savol, CS Chennubhotla
Journal of Chemical Theory and Computation 10 (8), 2964-2974, 2014
92014
Breadth versus depth: whole transcriptome sequencing has reduced sensitivity for detection of clinically relevant fusions compared to RNA comprehensive genomic profiling
RB Keller-Evans, D Munafo, T Ross, S Rudawsky, A Savol, RSP Huang
The Oncologist 29 (12), e1786-e1789, 2024
32024
Analytical validation (accuracy, reproducibility, limit of detection) and gene expression analysis of FoundationOneRNA assay for fusion detection in 189 clinical tumor specimens
D Sun, RSP Huang, M Green, C Cui, SD Sisoudiya, A Savol, C Xu, C Guo, ...
Plos one 20 (9), e0329697, 2025
12025
Analytical Validation (Accuracy, Reproducibility, Limit of Detection) of FoundationOne RNA Assay for Fusion Detection in 189 Clinical Tumor Specimens
D Sun, J He, W Jeck, L Albacker, C Cui, M Datto, M Green, C Guo, ...
JOURNAL OF MOLECULAR DIAGNOSTICS 25 (11), S145-S145, 2023
12023
Approximating frustration scores in complex networks via perturbed Laplacian spectra
AJ Savol, CS Chennubhotla
Physical Review E 92 (6), 062806, 2015
12015
Sensitive tissue-based detection of AR-V7 and other androgen receptor alterations using combined DNA/RNA comprehensive genomic profiling.
AJ Zurita, S Gupta, RP Graf, JS Ross, A Savol, E Grinman, J Allen, ...
Journal of Clinical Oncology 43 (5_suppl), 195-195, 2025
2025
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Articles 1–20