| PyMod 2.0: improvements in protein sequence-structure analysis and homology modeling within PyMOL G Janson, C Zhang, MG Prado, A Paiardini Bioinformatics 33 (3), 444-446, 2017 | 271 | 2017 |
| Direct generation of protein conformational ensembles via machine learning G Janson, G Valdes-Garcia, L Heo, M Feig Nature Communications 14 (1), 774, 2023 | 177 | 2023 |
| PyMod 3: a complete suite for structural bioinformatics in PyMOL G Janson, A Paiardini Bioinformatics 37 (10), 1471-1472, 2021 | 166 | 2021 |
| PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins H Ghafouri, T Lazar, A Del Conte, LG Tenorio Ku, P Tompa, SCE Tosatto, ... Nucleic acids research 52 (D1), D536-D544, 2024 | 66 | 2024 |
| Transferable deep generative modeling of intrinsically disordered protein conformations G Janson, M Feig PLOS Computational Biology 20 (5), e1012144, 2024 | 47 | 2024 |
| A novel bacterial l‐arginine sensor controlling c‐di‐GMP levels in Pseudomonas aeruginosa A Paiardini, F Mantoni, G Giardina, A Paone, G Janson, L Leoni, ... Proteins: Structure, Function, and Bioinformatics 86 (10), 1088-1096, 2018 | 47 | 2018 |
| The phytotoxin fusicoccin differently regulates 14‐3‐3 proteins association to mode III targets A Paiardini, P Aducci, L Cervoni, F Cutruzzolà, C Di Lucente, G Janson, ... IUBMB life 66 (1), 52-62, 2014 | 41 | 2014 |
| Intronic determinants coordinate charme lncRNA nuclear activity through the interaction with MATR3 and PTBP1 F Desideri, A Cipriano, S Petrezselyova, G Buonaiuto, T Santini, ... Cell Reports 33 (12), 2020 | 36 | 2020 |
| Physics‐based protein structure refinement in the era of artificial intelligence L Heo, G Janson, M Feig Proteins: Structure, Function, and Bioinformatics 89 (12), 1870-1887, 2021 | 31 | 2021 |
| Improved Sampling Strategies for Protein Model Refinement Based on Molecular Dynamics Simulation L Heo, CF Arbour, G Janson, M Feig Journal of Chemical Theory and Computation 17 (3), 1931-1943, 2021 | 27 | 2021 |
| Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling G Janson, A Grottesi, M Pietrosanto, G Ausiello, G Guarguaglini, ... PLoS computational biology 15 (12), e1007219, 2019 | 21 | 2019 |
| Functional Characterization and structure-guided mutational analysis of the transsulfuration enzyme cystathionine γ-Lyase from Toxoplasma gondii E Maresi, G Janson, S Fruncillo, A Paiardini, R Vallone, P Dominici, ... International journal of molecular sciences 19 (7), 2111, 2018 | 18 | 2018 |
| Heterozygosis in aromatic amino acid decarboxylase deficiency: Evidence for a positive interallelic complementation between R347Q and R358H mutations R Montioli, G Janson, A Paiardini, M Bertoldi, C Borri Voltattorni IUBMB life 70 (3), 215-223, 2018 | 15 | 2018 |
| A novel germline mutation in CDK4 codon 24 associated to familial melanoma I Bottillo, R La Starza, FC Radio, C Molica, L Pedace, T Pierini, ... Clinical genetics 93 (4), 934-935, 2018 | 13 | 2018 |
| Generation of protein dynamics by machine learning G Janson, M Feig Current Opinion in Structural Biology 93, 103115, 2025 | 9 | 2025 |
| Accurate Predictions of Molecular Properties of Proteins via Graph Neural Networks and Transfer Learning S Wozniak, G Janson, M Feig Journal of Chemical Theory and Computation 21 (9), 4830-4845, 2025 | 9 | 2025 |
| Deep generative modeling of temperature-dependent structural ensembles of proteins G Janson, A Jussupow, M Feig bioRxiv, 2025.03. 09.642148, 2025 | 9 | 2025 |
| Revisiting degron motifs in human AURKA required for its targeting by APC/CFZR1 A Abdelbaki, C Ascanelli, CN Okoye, HB Akman, G Janson, M Min, ... Life Science Alliance 6 (2), 2023 | 7 | 2023 |
| Towards a Unified Framework for Determining Conformational Ensembles of Disordered Proteins H Ghafouri, P Kadeřávek, AM Melo, MC Aspromonte, P Bernadó, J Cortes, ... arXiv preprint arXiv:2504.03590, 2025 | 5 | 2025 |
| Prediction and Modeling of Protein–Protein Interactions Using “Spotted” Peptides with a Template-Based Approach C Gasbarri, S Rosignoli, G Janson, D Boi, A Paiardini Biomolecules 12 (2), 201, 2022 | 4 | 2022 |
Alessandro PaiardiniSapienza University, RomeVerified email at uniroma1.it
