| A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202, 2014 | 875 | 2014 |
| Inferring gene regulatory networks from multiple microarray datasets Y Wang, T Joshi, XS Zhang, D Xu, L Chen Bioinformatics 22 (19), 2413-2420, 2006 | 393 | 2006 |
| Reverse Engineering Y Wang Encyclopedia of Systems Biology, 1855-1856, 2013 | 262* | 2013 |
| Modeling gene regulation from paired expression and chromatin accessibility data Z Duren, X Chen, R Jiang, Y Wang, WH Wong Proceedings of the National Academy of Sciences 114 (25), E4914-E4923, 2017 | 210 | 2017 |
| Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations Z Duren, X Chen, M Zamanighomi, W Zeng, A Satpathy, H Chang, ... Proc Natl Acad Sci U S A 115 (30), 7723-7728, 2018 | 194 | 2018 |
| Network-based drug repositioning Z Wu, Y Wang, L Chen Molecular BioSystems 9 (6), 1268-1281, 2013 | 193 | 2013 |
| Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data Y Wang, S Chen, N Deng, Y Wang PLoS One 8 (11), e78518, 2013 | 187 | 2013 |
| Prediction of protein–RNA binding sites by a random forest method with combined features ZP Liu, LY Wu, Y Wang, XS Zhang, L Chen Bioinformatics 26 (13), 1616-1622, 2010 | 185 | 2010 |
| Alignment of molecular networks by integer quadratic programming Z Li, S Zhang, Y Wang, XS Zhang, L Chen Bioinformatics 23 (13), 1631-1639, 2007 | 144 | 2007 |
| NOA: a novel Network Ontology Analysis method J Wang, Q Huang, ZP Liu, Y Wang, LY Wu, L Chen, XS Zhang Nucleic acids research 39 (13), e87-e87, 2011 | 125 | 2011 |
| Modularity optimization in community detection of complex networks XS Zhang, RS Wang, Y Wang, J Wang, Y Qiu, L Wang, L Chen Europhysics Letters 87 (3), 38002, 2009 | 124 | 2009 |
| Gene function prediction using labeled and unlabeled data XM Zhao, Y Wang, L Chen, K Aihara BMC bioinformatics 9 (1), 1-14, 2008 | 121 | 2008 |
| De novo prediction of RNA–protein interactions from sequence information Y Wang, X Chen, ZP Liu, Q Huang, Y Wang, D Xu, XS Zhang, R Chen, ... Molecular BioSystems 9, 133-142, 2013 | 118 | 2013 |
| Overlapping community detection in complex networks using symmetric binary matrix factorization ZY Zhang, Y Wang, YY Ahn Physical Review E 87 (6), 062803, 2013 | 117 | 2013 |
| GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model X Yang, G Liu, G Feng, D Bu, P Wang, J Jiang, S Chen, Q Yang, H Miao, ... Cell Research, 1-16, 2024 | 106 | 2024 |
| Risk prediction of emergency department revisit 30 days post discharge: a prospective study S Hao, B Jin, AY Shin, Y Zhao, C Zhu, Z Li, Z Hu, C Fu, J Ji, Y Wang, ... PloS one 9 (11), e112944, 2014 | 104 | 2014 |
| Disease-aging network reveals significant roles of aging genes in connecting genetic diseases J Wang, S Zhang, Y Wang, L Chen, XS Zhang PLoS computational biology 5 (9), e1000521, 2009 | 104 | 2009 |
| Network-based analysis of complex diseases ZP Liu, Y Wang, XS Zhang, L Chen IET Systems Biology 6 (1), 22-33, 2012 | 102 | 2012 |
| Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains ZP Liu, Y Wang, XS Zhang, L Chen BMC systems biology 4 (2), 1-12, 2010 | 102 | 2010 |
| TFAP2C-and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ... Cell stem cell 24 (2), 271-284. e8, 2019 | 99 | 2019 |
Luonan ChenChair Professor, School of Mathematical Sciences and School of AI, Shanghai Jiao Tong UniversityVerified email at sjtu.edu.cn
