| Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities GK Zhang, FJJ Chain, CL Abbott, ME Cristescu Evolutionary applications 11 (10), 1901-1914, 2018 | 192 | 2018 |
| Genomics of divergence along a continuum of parapatric population differentiation PGD Feulner, FJJ Chain, M Panchal, Y Huang, C Eizaguirre, M Kalbe, ... PLoS genetics 11 (2), e1004966, 2015 | 169 | 2015 |
| Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods JM Flynn, EA Brown, FJJ Chain, HJ MacIsaac, ME Cristescu Ecology and evolution 5 (11), 2252-2266, 2015 | 163 | 2015 |
| Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities? EA Brown, FJJ Chain, TJ Crease, HJ MacIsaac, ME Cristescu Ecology and evolution 5 (11), 2234-2251, 2015 | 150 | 2015 |
| Early detection of aquatic invaders using metabarcoding reveals a high number of non‐indigenous species in C anadian ports EA Brown, FJJ Chain, A Zhan, HJ MacIsaac, ME Cristescu Diversity and Distributions 22 (10), 1045-1059, 2016 | 143 | 2016 |
| Metabarcoding reveals strong spatial structure and temporal turnover of zooplankton communities among marine and freshwater ports FJJ Chain, EA Brown, HJ MacIsaac, ME Cristescu Diversity and Distributions 22 (5), 493-504, 2016 | 132 | 2016 |
| Genome‐wide patterns of standing genetic variation in a marine population of three‐spined sticklebacks PGD Feulner, FJJ Chain, M Panchal, C Eizaguirre, M Kalbe, TL Lenz, ... Molecular ecology 22 (3), 635-649, 2013 | 117 | 2013 |
| The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data EL Clare, FJJ Chain, JE Littlefair, ME Cristescu Genome 59 (11), 981-990, 2016 | 111 | 2016 |
| Living on the edge: how philopatry maintains adaptive potential VA Stiebens, SE Merino, C Roder, FJJ Chain, PLM Lee, C Eizaguirre Proceedings of the Royal Society B: Biological Sciences 280 (1763), 20130305, 2013 | 110 | 2013 |
| Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis FJJ Chain, BJ Evans PLoS genetics 2 (4), e56, 2006 | 98 | 2006 |
| Extensive copy-number variation of young genes across stickleback populations FJJ Chain, PGD Feulner, M Panchal, C Eizaguirre, IE Samonte, M Kalbe, ... PLoS genetics 10 (12), e1004830, 2014 | 97 | 2014 |
| Spontaneous Mutation Accumulation in Daphnia pulex in Selection-Free vs. Competitive Environments JM Flynn, FJJ Chain, DJ Schoen, ME Cristescu Molecular Biology and Evolution 34 (1), 160-173, 2017 | 84 | 2017 |
| No consistent effects of humans on animal genetic diversity worldwide KL Millette, V Fugere, C Debyser, A Greiner, FJJ Chain, A Gonzalez Ecology letters 23 (1), 55-67, 2020 | 76 | 2020 |
| The pipid root AJ Bewick, FJJ Chain, J Heled, BJ Evans Systematic Biology 61 (6), 913-926, 2012 | 63 | 2012 |
| Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization FJJ Chain, D Ilieva, BJ Evans BMC evolutionary biology 8 (1), 43, 2008 | 61 | 2008 |
| Transcriptome profiling of immune tissues reveals habitat‐specific gene expression between lake and river sticklebacks Y Huang, FJJ Chain, M Panchal, C Eizaguirre, M Kalbe, TL Lenz, ... Molecular ecology 25 (4), 943-958, 2016 | 60 | 2016 |
| Origin matters: Using a local reference genome improves measures in population genomics DMJ Thorburn, K Sagonas, M Binzer‐Panchal, FJJ Chain, PGD Feulner, ... Molecular ecology resources 23 (7), 1706-1723, 2023 | 58 | 2023 |
| Reproducibility of pyrosequencing data for biodiversity assessment in complex communities A Zhan, S He, EA Brown, FJJ Chain, TW Therriault, CL Abbott, DD Heath, ... Methods in Ecology and Evolution 5 (9), 881-890, 2014 | 54 | 2014 |
| Genomic divergence between nine-and three-spined sticklebacks B Guo, FJJ Chain, E Bornberg-Bauer, EH Leder, J Merilä Bmc Genomics 14 (1), 756, 2013 | 51 | 2013 |
| The odds of duplicate gene persistence after polyploidization FJJ Chain, J Dushoff, BJ Evans BMC genomics 12 (1), 599, 2011 | 48 | 2011 |
