| Tubulin lattice in cilia is in a stressed form regulated by microtubule inner proteins M Ichikawa, AAZ Khalifa, S Kubo, D Dai, K Basu, MAF Maghrebi, J Vargas, ... Proceedings of the National Academy of Sciences 116 (40), 19930-19938, 2019 | 87 | 2019 |
| The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications A Khalifa, M Ichikawa, D Dai, C Black, K Peri, T McAlear, S Kubo, ... Biophysical Journal 118 (3), 31a, 2020 | 74 | 2020 |
| Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins S Kubo, CS Black, E Joachimiak, SK Yang, T Legal, K Peri, AAZ Khalifa, ... Nature communications 14 (1), 2168, 2023 | 73 | 2023 |
| Remodeling and activation mechanisms of outer arm dyneins revealed by cryo‐EM S Kubo, SK Yang, CS Black, D Dai, M Valente-Paterno, J Gaertig, ... EMBO reports 22 (9), e52911, 2021 | 52 | 2021 |
| Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model IC Unarta, S Cao, S Kubo, W Wang, PPH Cheung, X Gao, S Takada, ... Proceedings of the National Academy of Sciences 118 (17), e2024324118, 2021 | 48 | 2021 |
| Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor S Kubo, T Niina, S Takada Scientific reports 10 (1), 8225, 2020 | 45 | 2020 |
| Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations S Kubo, W Li, S Takada PLoS computational biology 13 (9), e1005748, 2017 | 25 | 2017 |
| Rotational mechanism of FO motor in the F-type ATP synthase driven by the proton motive force S Kubo, S Takada Frontiers in Microbiology 13, 1681, 2022 | 16 | 2022 |
| Effect of α-tubulin acetylation on the doublet microtubule structure SK Yang, S Kubo, CS Black, K Peri, D Dai, T Legal, M Valente-Paterno, ... Elife 12, RP92219, 2024 | 13 | 2024 |
| Removing the parachuting artifact using two-way scanning data in high-speed atomic force microscopy S Kubo, K Umeda, N Kodera, S Takada Biophysics and Physicobiology 20 (1), e200006, 2023 | 12 | 2023 |
| Resolving the data asynchronicity in high-speed atomic force microscopy measurement via the Kalman Smoother S Kubo, S Kato, K Nakamura, N Kodera, S Takada Scientific reports 10 (1), 18393, 2020 | 12 | 2020 |
| FO-F1 coupling and symmetry mismatch in ATP synthase resolved in every FO rotation step S Kubo, T Niina, S Takada Biophysical Journal 122 (14), 2898-2909, 2023 | 11 | 2023 |
| Regulatory mechanisms of the dynein-2 motility by post-translational modification revealed by MD simulation S Kubo, KH Bui Scientific reports 13 (1), 1477, 2023 | 10 | 2023 |
| How cytoplasmic dynein couples atp hydrolysis cycle to diverse stepping motions: Kinetic modeling S Kubo, T Shima, S Takada Biophysical Journal 118 (8), 1930-1945, 2020 | 9 | 2020 |
| Theory of photosynthetic membrane influence on B800-B850 energy transfer in the LH2 complex C Kulkarni, HÓ Gestsson, L Cupellini, B Mennucci, A Olaya-Castro Biophysical Journal 124 (5), 722-739, 2025 | 8* | 2025 |
| Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins. Nat. Commun. 14, 2168 S Kubo, CS Black, E Joachimiak, SK Yang, T Legal, K Peri, AAZ Khalifa, ... | 8 | 2023 |
| Cooperation among c-subunits of FoF1-ATP synthase in rotation-coupled proton translocation N Mitome, S Kubo, S Ohta, H Takashima, Y Shigefuji, T Niina, S Takada Elife 11, e69096, 2022 | 8 | 2022 |
| Heterogeneous dissociation process of truncated RNAs by oligomerized Vasa helicase Y Kinoshita, R Murakami, N Muto, S Kubo, R Iizuka, S Uemura Communications Biology 4 (1), 1386, 2021 | 5 | 2021 |
| The ATPase asymmetry: Novel computational insight into coupling diverse FO motors with tripartite F1 S Kubo, Y Okada Biophysical Journal 124 (6), 891-900, 2025 | 4 | 2025 |
| Theoretical insights into rotary mechanism of MotAB in the bacterial flagellar motor S Kubo, Y Okada, S Takada Biophysical Journal 123 (20), 3587-3599, 2024 | 3 | 2024 |
