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Karthik Gangavarapu
Karthik Gangavarapu
Verified email at scripps.edu - Homepage
Title
Cited by
Cited by
Year
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ...
Nature protocols 12 (6), 1261-1276, 2017
13192017
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar
ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ...
Genome biology 20 (1), 8, 2019
11122019
CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ...
Nature genetics 49 (2), 170-174, 2017
6772017
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
4992022
Zika virus evolution and spread in the Americas
HC Metsky, CB Matranga, S Wohl, SF Schaffner, CA Freije, SM Winnicki, ...
Nature 546 (7658), 411-415, 2017
4762017
Genomic epidemiology reveals multiple introductions of Zika virus into the United States
ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ...
Nature 546 (7658), 401-405, 2017
4072017
Outbreak. info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
K Gangavarapu, AA Latif, JL Mullen, M Alkuzweny, E Hufbauer, G Tsueng, ...
Nature Methods 20 (4), 512-522, 2023
3932023
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ...
Science 377 (6609), 960-966, 2022
3212022
Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States
NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ...
Cell 184 (10), 2587-2594. e7, 2021
3122021
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California
X Deng, W Gu, S Federman, L Du Plessis, OG Pybus, NR Faria, C Wang, ...
Science 369 (6503), 582-587, 2020
2942020
A role for Fc function in therapeutic monoclonal antibody-mediated protection against Ebola virus
BM Gunn, WH Yu, MM Karim, JM Brannan, AS Herbert, AZ Wec, ...
Cell host & microbe 24 (2), 221-233. e5, 2018
2572018
Systematic analysis of monoclonal antibodies against Ebola virus GP defines features that contribute to protection
EO Saphire, SL Schendel, ML Fusco, K Gangavarapu, BM Gunn, AZ Wec, ...
Cell 174 (4), 938-952. e13, 2018
2242018
Travel surveillance and genomics uncover a hidden Zika outbreak during the waning epidemic
ND Grubaugh, S Saraf, K Gangavarapu, A Watts, AL Tan, RJ Oidtman, ...
Cell 178 (5), 1057-1071. e11, 2019
1192019
Ebola virus transmission initiated by relapse of systemic Ebola virus disease
P Mbala-Kingebeni, C Pratt, M Mutafali-Ruffin, MG Pauthner, F Bile, ...
New England Journal of Medicine 384 (13), 1240-1247, 2021
1122021
Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic
A Crits-Christoph, JI Levy, JE Pekar, SA Goldstein, R Singh, Z Hensel, ...
Cell 187 (19), 5468-5482. e11, 2024
1072024
Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States
NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ...
MedRxiv, 2021
1012021
Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades
R Klitting, LE Kafetzopoulou, W Thiery, G Dudas, S Gryseels, ...
Nature communications 13 (1), 5596, 2022
902022
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework
S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ...
Nature communications 11 (1), 5620, 2020
862020
Inferring the risk factors behind the geographical spread and transmission of Zika in the Americas
LM Gardner, A Bota, K Gangavarapu, MUG Kraemer, ND Grubaugh
PLoS neglected tropical diseases 12 (1), e0006194, 2018
862018
Outbreak. info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources
G Tsueng, JL Mullen, M Alkuzweny, M Cano, B Rush, E Haag, J Lin, ...
Nature methods 20 (4), 536-540, 2023
762023
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