| MicroRNA-9 Couples Brain Neurogenesis and Angiogenesis R Madelaine, SA Sloan, N Huber, JH Notwell, LC Leung, G Skariah, ... Cell Reports 20 (7), 1533-1542, 2017 | 128 | 2017 |
| A family of transposable elements co-opted into developmental enhancers in the mouse neocortex JH Notwell, T Chung, W Heavner, G Bejerano Nature communications 6 (1), 1-7, 2015 | 125 | 2015 |
| Computational methods to detect conserved non-genic elements in phylogenetically isolated genomes: application to zebrafish M Hiller, S Agarwal, JH Notwell, R Parikh, H Guturu, AM Wenger, ... Nucleic acids research 41 (15), e151-e151, 2013 | 103 | 2013 |
| TBR1 regulates autism risk genes in the developing neocortex JH Notwell, WE Heavner, SF Darbandi, S Katzman, WL McKenna, ... Genome Research 26 (8), 1013-1022, 2016 | 91 | 2016 |
| A guide to single-cell transcriptomics in adult rodent brain: the medium spiny neuron transcriptome revisited H Ho, MD Both, A Siniard, S Sharma, JH Notwell, M Wallace, DP Leone, ... Frontiers in cellular neuroscience 12, 159, 2018 | 53 | 2018 |
| Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes WE Heavner, S Ji, JH Notwell, ES Dyer, AM Tseng, J Birgmeier, B Yoo, ... Proceedings of the National Academy of Sciences 117 (40), 25074-25084, 2020 | 40 | 2020 |
| The enhancer landscape during early neocortical development reveals patterns of dense regulation and co-option AM Wenger, SL Clarke, JH Notwell, T Chung, G Tuteja, H Guturu, ... PLoS genetics 9 (8), e1003728, 2013 | 37 | 2013 |
| A screen for deeply conserved non-coding GWAS SNPs uncovers a MIR-9-2 functional mutation associated to retinal vasculature defects in human R Madelaine, JH Notwell, G Skariah, C Halluin, CC Chen, G Bejerano, ... Nucleic acids research 46 (7), 3517-3531, 2018 | 33 | 2018 |
| ADMET property prediction through combinations of molecular fingerprints JH Notwell, MW Wood arXiv preprint arXiv:2310.00174, 2023 | 22 | 2023 |
| Directed Evolution of a Plant Immune Receptor for Broad Spectrum Effector Recognition EY Rim, OD Garrett, AJ Howard, Y Shim, Y Li, JE Van Dyke, RC Packer, ... bioRxiv, 2024.09. 30.614878, 2025 | 5 | 2025 |
| Combining Directed Evolution with Machine Learning Enables Accurate Genotype-to-Phenotype Predictions AJ Howard, EY Rim, OD Garrett, Y Shim, JH Notwell, PC Ronald bioRxiv, 2025 | 2 | 2025 |
| Differential chromatin accessibility in developing projection neurons is correlated with transcriptional regulation of cell fate WE Heavner, S Ji, JH Notwell, ES Dyer, AM Tseng, J Birgmeier, B Yoo, ... bioRxiv, 645572, 2019 | 1 | 2019 |