| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1564 | 2018 |
| DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ... Nature 544 (7648), 115-119, 2017 | 578 | 2017 |
| GraphProt: modeling binding preferences of RNA-binding proteins D Maticzka, SJ Lange, F Costa, R Backofen Genome biology 15 (1), R17, 2014 | 311 | 2014 |
| Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila IA Ilik, JJ Quinn, P Georgiev, F Tavares-Cadete, D Maticzka, S Toscano, ... Molecular cell 51 (2), 156-173, 2013 | 199 | 2013 |
| Global or local? Predicting secondary structure and accessibility in mRNAs SJ Lange, D Maticzka, M Möhl, JN Gagnon, CM Brown, R Backofen Nucleic Acids Research, 2012 | 174 | 2012 |
| Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis H Richter, J Zoephel, J Schermuly, D Maticzka, R Backofen, L Randau Nucleic Acids Research, 2012 | 143 | 2012 |
| Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression R Ferrarese, GR Harsh, AK Yadav, E Bug, D Maticzka, W Reichardt, ... The Journal of clinical investigation 124 (7), 2861-2876, 2014 | 118 | 2014 |
| In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ... Genome research 28 (5), 699-713, 2018 | 88 | 2018 |
| The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts F Rehfeld, D Maticzka, S Grosser, P Knauff, M Eravci, I Vida, R Backofen, ... Nature communications 9 (1), 1235, 2018 | 86 | 2018 |
| Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration T Clapes, A Polyzou, P Prater, Sagar, A Morales-Hernandez, MG Ferrarini, ... Nature cell biology 23 (7), 704-717, 2021 | 83 | 2021 |
| uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins D Maticzka, IA Ilik, T Aktas, R Backofen, A Akhtar Nature communications 9 (1), 1142, 2018 | 36 | 2018 |
| A mutually exclusive stem–loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila IA Ilik, D Maticzka, P Georgiev, NM Gutierrez, R Backofen, A Akhtar Genes & development 31 (19), 1973-1987, 2017 | 29 | 2017 |
| FLASH: ultra-fast protocol to identify RNA–protein interactions in cells IA Ilik, T Aktas, D Maticzka, R Backofen, A Akhtar Nucleic Acids Research 48 (3), e15-e15, 2020 | 23 | 2020 |
| Classifying proteinlike sequences in arbitrary lattice protein models using LatPack M Mann, D Maticzka, R Saunders, R Backofen HFSP journal 2 (6), 396-404, 2008 | 22 | 2008 |
| Nephronophthisis gene products display RNA-binding properties and are recruited to stress granules L Estrada Mallarino, C Engel, İA Ilık, D Maticzka, F Heyl, B Müller, ... Scientific Reports 10 (1), 15954, 2020 | 18 | 2020 |
| SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins M Preusse, C Marr, S Saunders, D Maticzka, H Lickert, R Backofen, ... RNA biology 12 (9), 998-1009, 2015 | 16 | 2015 |
| Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis F Heyl, D Maticzka, M Uhl, R Backofen Gigascience 9 (11), giaa108, 2020 | 14 | 2020 |
| Bioconda: A sustainable and comprehensive software distribution for the life sciences. bioRxiv. 2017 R Dale, B Grüning, A Sjödin Publisher Full Text, 0 | 5 | |
| CLIP-seq data analysis from pre-processing to motif detection F Heyl, D Maticzka, B Batut Galaxy Training Network, 2023 | 1 | 2023 |
| Heterogenous nuclear ribonucleoprotein D-like controls endothelial cell functions S Fischer, C Lichtenthaeler, A Stepanenko, F Heyl, D Maticzka, ... Biological Chemistry 405 (4), 229-239, 2024 | | 2024 |
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
