| Succinct colored de Bruijn graphs MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ... Bioinformatics 33 (20), 3181-3187, 2017 | 144 | 2017 |
| Building large updatable colored de Bruijn graphs via merging MD Muggli, B Alipanahi, C Boucher Bioinformatics 35 (14), i51-i60, 2019 | 54 | 2019 |
| Misassembly detection using paired-end sequence reads and optical mapping data MD Muggli, SJ Puglisi, R Ronen, C Boucher Bioinformatics 31 (12), i80-i88, 2015 | 50 | 2015 |
| Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ... Communications biology 2 (1), 294, 2019 | 46 | 2019 |
| Efficient indexed alignment of contigs to optical maps MD Muggli, SJ Puglisi, C Boucher International Workshop on Algorithms in Bioinformatics, 68-81, 2014 | 45 | 2014 |
| Error correcting optical mapping data K Mukherjee, D Washimkar, MD Muggli, L Salmela, C Boucher GigaScience 7 (6), giy061, 2018 | 16 | 2018 |
| Metagenome SNP calling via read-colored de Bruijn graphs B Alipanahi, MD Muggli, M Jundi, NR Noyes, C Boucher Bioinformatics 36 (22-23), 5275-5281, 2020 | 15 | 2020 |
| Fast and accurate correction of optical mapping data via spaced seeds L Salmela, K Mukherjee, SJ Puglisi, MD Muggli, C Boucher Bioinformatics 36 (3), 682-689, 2020 | 12 | 2020 |
| Disentangled long-read de Bruijn graphs via optical maps B Alipanahi, L Salmela, SJ Puglisi, M Muggli, C Boucher bioRxiv, 094235, 2016 | 11 | 2016 |
| Kohdista: an efficient method to index and query possible Rmap alignments MD Muggli, SJ Puglisi, C Boucher Algorithms for Molecular Biology 14 (1), 25, 2019 | 9 | 2019 |
| Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294 SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ... | 9 | 2019 |
| Algorithms in Bioinformatics M Muggli, S Puglisi, C Boucher Lecture Notes in Computer Science, 68, 2014 | 9 | 2014 |
| Resistome SNP calling via read colored de Bruijn graphs B Alipanahi, MD Muggli, M Jundi, N Noyes, C Boucher bioRxiv, 156174, 2017 | 8 | 2017 |
| A succinct solution to Rmap alignment MD Muggli, SJ Puglisi, C Boucher 18th International Workshop on Algorithms in Bioinformatics (WABI 2018), 12 …, 2018 | 7 | 2018 |
| Succinct colored de Bruijn graphs K Belk, C Boucher, A Bowe, T Gagie, P Morley, MD Muggli, NR Noyes, ... bioRxiv, 040071, 2016 | 6 | 2016 |
| Succinct de Bruijn graph construction for massive populations through space-efficient merging MD Muggli, C Boucher bioRxiv, 2017 | 5 | 2017 |
| Reducing redundancy in source code MD Muggli US Patent 8,683,454, 2014 | 3 | 2014 |
| 18th International Workshop on Algorithms in Bioinformatics (WABI 2018) L Parida, E Ukkonen International Workshop on Algorithms in Bioinformatics (WABI 2018), 2018 | | 2018 |
| Enhancing Space and Time Efficiency of Genomics in Practice through Sophisticated Applications of the FM-Index MD Muggli Colorado State University, 2018 | | 2018 |
| LIPIcs, Volume 88, WABI'17, Complete Volume}} R Schwartz, K Reinert, B Alipanahi, L Salmela, SJ Puglisi, M Muggli, ... 17th International Workshop on Algorithms in Bioinformatics (WABI 2017) 88, 0, 2017 | | 2017 |
Christina BoucherProfessor, University of FloridaVerified email at ufl.edu
