| Analyzing the impact of filter bubbles on social network polarization U Chitra, C Musco Proceedings of the 13th international conference on web search and data …, 2020 | 251* | 2020 |
| Random walks on hypergraphs with edge-dependent vertex weights U Chitra, B Raphael International conference on machine learning, 1172-1181, 2019 | 169 | 2019 |
| Mapping the topography of spatial gene expression with interpretable deep learning U Chitra, BJ Arnold, H Sarkar, K Sanno, C Ma, S Lopez-Darwin, ... Nature Methods 22 (2), 298-309, 2025 | 43 | 2025 |
| Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics C Ma*, U Chitra*, S Zhang, BJ Raphael Cell Systems 13 (10), 786-797. e13, 2022 | 20 | 2022 |
| NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks. MA Reyna*, U Chitra*, R Elyanow, BJ Raphael RECOMB, 169-185, 2020 | 17 | 2020 |
| NetMix2: Unifying network propagation and altered subnetworks U Chitra*, TY Park*, BJ Raphael International Conference on Research in Computational Molecular Biology, 193-208, 2022 | 12* | 2022 |
| A count-based model for delineating cell–cell interactions in spatial transcriptomics data H Sarkar*, U Chitra*, J Gold, BJ Raphael Bioinformatics 40 (Supplement_1), i481-i489, 2024 | 11 | 2024 |
| Quantifying and reducing bias in maximum likelihood estimation of structured anomalies U Chitra, K Ding, JCH Lee, BJ Raphael International Conference on Machine Learning, 1908-1919, 2021 | 8 | 2021 |
| Committee selection is more similar than you think: Evidence from avalanche and stellar T Chitra, U Chitra arXiv preprint arXiv:1904.09839, 2019 | 6 | 2019 |
| Spatial metabolic gradients in the liver and small intestine LZ Samarah, C Zheng, X Xing, WD Lee, A Afriat, U Chitra, MR MacArthur, ... Nature, 1-9, 2025 | 3 | 2025 |
| GASTON-Mix: a unified model of spatial gradients and domains using spatial mixture-of-experts U Chitra, S Dan, F Krienen, BJ Raphael Bioinformatics, 2025 | 3 | 2025 |
| Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis U Chitra, B Arnold, BJ Raphael Nature communications 16 (1), 1711, 2025 | 2* | 2025 |
| Mapping spatial gradients in spatial transcriptomics data with score matching A Wang, D Geman, U Chitra*, L Younes* bioRxiv, 2025.11. 24.690257, 2025 | 1 | 2025 |
| Decoding the causal drivers of spatial cellular topology P Shankar, H Liang, U Chitra*, R Singh* bioRxiv, 2025.03. 19.644241, 2025 | 1 | 2025 |
| A latent variable model for evaluating mutual exclusivity and co-occurrence between driver mutations in cancer A Shuaibi*, U Chitra*, B Raphael bioRxiv, 2024.04. 24.590995, 2024 | 1 | 2024 |
| Anomaly detection in spatial transcriptomics via spatially localized density comparison G Hu, J Gold, U Chitra, S Joshi, BJ Raphael Bioinformatics 41 (Supplement_1), i493-i501, 2025 | | 2025 |
| Algorithms for Understanding the Spatial and Network Organization of Biological Systems UR Chitra Princeton University, 2024 | | 2024 |
| Machine learning algorithms for spatial and network biology U Chitra | | |
| Random Walks on Hypergraphs with Edge-Dependent Vertex Weights: Supplementary Material U Chitra, BJ Raphael | | |
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu
