| Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch J Salojärvi, OP Smolander, K Nieminen, S Rajaraman, O Safronov, ... Nature genetics 49 (6), 904-912, 2017 | 330 | 2017 |
| Sealed in a lake—Biology and conservation of the endangered Saimaa ringed seal: A review M Kunnasranta, M Niemi, M Auttila, M Valtonen, J Kammonen, T Nyman Biological Conservation 253, 108908, 2021 | 59 | 2021 |
| Complete genome sequence of Propionibacterium freudenreichii DSM 20271T P Koskinen, P Deptula, OP Smolander, F Tamene, J Kammonen, ... Standards in genomic sciences 10 (1), 83, 2015 | 39 | 2015 |
| Bracketing phenogenotypic limits of mammalian hybridization Y Savriama, M Valtonen, JI Kammonen, P Rastas, OP Smolander, ... Royal society open science 5 (11), 2018 | 38 | 2018 |
| Fragmented habitat compensates for the adverse effects of genetic bottleneck A Löytynoja, P Rastas, M Valtonen, J Kammonen, L Holm, MT Olsen, ... Current Biology 33 (6), 1009-1018. e7, 2023 | 25 | 2023 |
| Modelling a Neolithic population bottleneck in Finland: a genetic simulation T Sundell, M Heger, J Kammonen, P Onkamo Fennoscandia Archaeologica, 2010 | 21 | 2010 |
| gapFinisher: a reliable gap filling pipeline for SSPACE-LongRead scaffolder output JI Kammonen, OP Smolander, L Paulin, PAB Pereira, P Laine, ... Plos one 14 (9), e0216885, 2019 | 20 | 2019 |
| Archaeology, genetics and a population bottleneck in prehistoric Finland T Sundell, J Kammonen, P Halinen, P Pesonen, P Onkamo Antiquity 88 (342), 1132-1147, 2014 | 19 | 2014 |
| An evolutionarily distinct ringed seal in the Ilulissat Icefjord A Rosing‐Asvid, A Löytynoja, P Momigliano, RG Hansen, ... Molecular ecology 32 (22), 5932-5943, 2023 | 14 | 2023 |
| Bayesian spatiotemporal analysis of radiocarbon dates from eastern Fennoscandia P Onkamo, J Kammonen, P Pesonen, T Sundell, E Moltchanova, ... Radiocarbon 54 (3-4), 649-659, 2012 | 13 | 2012 |
| Bayesian spatial analysis of archaeological finds and radiocarbon dates: an example from Finland 4000–3500 cal BC J Kammonen, T Sundell, E Moltchanova, P Pesonen, M Oinonen, ... Revive the Past, Proceedings of the 39th Conference in Computer Applications …, 2012 | 12 | 2012 |
| Archaeological radiocarbon dates and ancient shorelines-resources and reservoirs P Pesonen, J Kammonen, E Moltchanova, M Oinonen, P Onkamo Proceedings of the seminar ‘The Sea Level Displacement and Bedrock Uplift …, 2011 | 12 | 2011 |
| Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density … OP Smolander, D Blande, V Ahola, P Rastas, J Tanskanen, JI Kammonen, ... GigaScience 11, giab097, 2022 | 11 | 2022 |
| Genomic evidence uncovers inbreeding and supports translocations in rescuing the genetic diversity of a landlocked seal population T Sundell, JI Kammonen, E Mustanoja, V Biard, M Kunnasranta, M Niemi, ... Conservation Genetics 24 (2), 155-165, 2023 | 9 | 2023 |
| Retracing prehistoric population events in Finland using simulation T Sundell, J Kammonen, M Heger, JU Palo, P Onkamo Archaeology in the Digital Era, 93-104, 2025 | 5 | 2025 |
| Author correction: genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch J Salojärvi, OP Smolander, K Nieminen, S Rajaraman, O Safronov, ... Nature Genetics 51 (7), 1187-1189, 2019 | 5 | 2019 |
| Improving the throughput of the forward population genetic simulation environment simuPOP J Kammonen Unpublished MSc thesis, Department of Computer Science, University of Helsinki, 2013 | 4 | 2013 |
| Bracketing phenotypic limits of mammalian hybridization Y Savriama, M Valtonen, J Kammonen, P Rastas, OP Smolander, ... BioRXiv, 310789, 2018 | 3 | 2018 |
| Bayesian Spatial Modelling of Radiocarbon Dated Archaeological Artefacts Using R-INLA J Kammonen, T Sundell, P Pesonen, M Oinonen, P Onkamo Archaeology in the Digital Era, 414-419, 2025 | 2 | 2025 |
| Principal Component Analysis of Archaeological Data J Kammonen, T Sundell CAA2015, 81, 2016 | 2 | 2016 |
