| The genome sequence of segmental allotetraploid peanut Arachis hypogaea DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ... Nature genetics 51 (5), 877-884, 2019 | 712 | 2019 |
| The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization RF McCormick, SK Truong, A Sreedasyam, J Jenkins, S Shu, D Sims, ... The Plant Journal 93 (2), 338-354, 2018 | 631 | 2018 |
| Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement ZJ Chen, A Sreedasyam, A Ando, Q Song, LM De Santiago, ... Nature genetics 52 (5), 525-533, 2020 | 453 | 2020 |
| A mosaic monoploid reference sequence for the highly complex genome of sugarcane O Garsmeur, G Droc, R Antonise, J Grimwood, B Potier, K Aitken, ... Nature communications 9 (1), 2638, 2018 | 440 | 2018 |
| GENESPACE tracks regions of interest and gene copy number variation across multiple genomes JT Lovell, A Sreedasyam, ME Schranz, M Wilson, JW Carlson, A Harkess, ... elife 11, e78526, 2022 | 331 | 2022 |
| DNA Cloning Strategies LJ Cseke, G Trivedi, A Sreedasyam, PB Kaufman, A Kirakosyan Handbook of Molecular and Cellular Methods in Biology and Medicine 3, 29-36, 2011 | 265* | 2011 |
| Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass JT Lovell, AH MacQueen, S Mamidi, J Bonnette, J Jenkins, JD Napier, ... Nature 590 (7846), 438-444, 2021 | 254 | 2021 |
| A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci S Mamidi, A Healey, P Huang, J Grimwood, J Jenkins, K Barry, ... Nature biotechnology 38 (10), 1203-1210, 2020 | 171 | 2020 |
| The complex polyploid genome architecture of sugarcane AL Healey, O Garsmeur, JT Lovell, S Shengquiang, A Sreedasyam, ... Nature 628 (8009), 804-810, 2024 | 144 | 2024 |
| A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa BT Hofmeister, J Denkena, M Colomé-Tatché, Y Shahryary, R Hazarika, ... Genome biology 21 (1), 259, 2020 | 142 | 2020 |
| The genomic landscape of molecular responses to natural drought stress in Panicum hallii JT Lovell, J Jenkins, DB Lowry, S Mamidi, A Sreedasyam, X Weng, ... Nature communications 9 (1), 5213, 2018 | 135 | 2018 |
| The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data PF Perroud, FB Haas, M Hiss, KK Ullrich, A Alboresi, M Amirebrahimi, ... The Plant Journal 95 (1), 168-182, 2018 | 130 | 2018 |
| Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding JT Lovell, NB Bentley, G Bhattarai, JW Jenkins, A Sreedasyam, Y Alarcon, ... Nature communications 12 (1), 4125, 2021 | 104 | 2021 |
| Gene-rich UV sex chromosomes harbor conserved regulators of sexual development SB Carey, J Jenkins, JT Lovell, F Maumus, A Sreedasyam, AC Payton, ... Science Advances 7 (27), eabh2488, 2021 | 95 | 2021 |
| The tepary bean genome provides insight into evolution and domestication under heat stress SM Moghaddam, A Oladzad, C Koh, L Ramsay, JP Hart, S Mamidi, ... Nature communications 12 (1), 2638, 2021 | 95 | 2021 |
| PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens N Fernandez‐Pozo, FB Haas, R Meyberg, KK Ullrich, M Hiss, PF Perroud, ... The Plant Journal 102 (1), 165-177, 2020 | 88 | 2020 |
| Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome PE Larsen, A Sreedasyam, G Trivedi, GK Podila, LJ Cseke, FR Collart BMC Systems Biology 5 (1), 70, 2011 | 85 | 2011 |
| Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics AL Healey, B Piatkowski, JT Lovell, A Sreedasyam, SB Carey, S Mamidi, ... Nature Plants 9 (2), 238-254, 2023 | 80 | 2023 |
| Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics D Torkamaneh, J Laroche, B Valliyodan, L O’Donoughue, E Cober, ... Plant biotechnology journal 19 (2), 324-334, 2021 | 76 | 2021 |
| JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom A Sreedasyam, C Plott, MS Hossain, JT Lovell, J Grimwood, JW Jenkins, ... Nucleic acids research 51 (16), 8383-8401, 2023 | 62 | 2023 |
Jeremy SchmutzHudsonAlpha Institute for Biotechnology and Joint Genome InstituteVerified email at hudsonalpha.com
